Table S1.
List of primers used in this study
| Primer name | Primer sequence |
| Primers for ChIP | |
| SEP1p1F | 5′-GAGAGCGTGGGAATGAAAGTAAA-3′ |
| SEP1p1R | 5′-AAGAAATATGTGAGGGTGAGGTTAGG-3′ |
| SEP1p2F | 5′-CCTCCTCCCATATGATGACTTCTC-3′ |
| SEP1p2R | 5′-CATCTCTAGTTTTCTTGTTTCTGATTATAGTCT-3′ |
| SEP2p1F | 5′-GGGAGAGAAGGTGTGAGAATGTTT-3′ |
| SEP2p1R | 5′-AGAGATCATTAGGGTTTGGTGATACA-3′ |
| SEP2p2F | 5′-GCCGATCATATCTTCCAGCTAAA-3′ |
| SEP2p2R | 5′-TTCACATTCTTCAACTGCTACATGTT-3′ |
| ELF4F | 5′-CGGACACCGAGGCGAGTA-3′ |
| ELF4R | 5′-ACGCGCGTGTTCTTTGATATC-3′ |
| WUSp1F | 5′-AGATCCGATCACTGAAGTTGCTT-3′ |
| WUSp1R | 5′-TTTGCACGTTGTGTTGAATCC-3′ |
| WUSp2F | 5′-GCACATTTTTCAATAGGGTTT-3′ |
| WUSp2R | 5′-AGGTTTTGTGTGAGAGAGAAGA-3′ |
| WUSp3F | 5′-TTGTAATGGTTTGCTATTGTAC-3′ |
| WUSp3R | 5′-GTTGATTTTGGTCGTTATCC-3′ |
| CLV3p1F | 5′-CCCCTTCTCATTTCATTACCA-3′ |
| CLV3p1R | 5′-GCAGAAAACTCTTCGAATCCA-3′ |
| CLV3p2F | 5′-ATTAGAGTATGTGCCGGTGCC-3′ |
| CLV3p2R | 5′-TGCTGTGGAGGTTCACAACTAA-3′ |
| CLV3p3F | 5′-CAAGGCTCATATAATCCATTCA-3′ |
| CLV3p3R | 5′-CAATATGGATGATACCTTAATCGG-3′ |
| CLV3p4F | 5′-AAGACCTAATAAATTCGTGGACTTG-3′ |
| CLV3p4R | 5′-GAACAATTTTAAAGACATTCGGACC-3′ |
| AT3G01520 F | 5′-GCGAAGGGTTCTTTGTCTTCT-3′ |
| AT3G01520 R | 5′-CACCATCACTTTTGTTGGCTC-3′ |
| AT3G03450 F | 5′-CAAACAATAGTGGCATGCTCTG-3′ |
| AT3G03450 R | 5′-AAAGGAGATTCTGAGAGGAGCA-3′ |
| AT5G47800 F | 5′-CATCGACCCACGTTGACTACT-3′ |
| AT5G47800 R | 5′-TGTTTATCCCCACGAATCTCA-3′ |
| AT4G02630 F | 5′-ATGATGAGTGCAAGTCCCATC-3′ |
| AT4G02630 R | 5′-TTGCTTTTGTTCTGCTTCACA-3′ |
| AT5G23940 F | 5′-GGGAAGTAGAGTCCTTGAAATCC-3′ |
| AT5G23940 R | 5′-GGATTTGATGAAGTTGTTGGG-3′ |
| AT3G15820 F | 5′-AAAGGTAAAGCCCACCAAAGA-3′ |
| AT3G15820 R | 5′-ATACAAGGCGGAGATTTCCAA-3′ |
| AT5G51430 F | 5′-ACTGCGTGGTCTCCAAGTAAA-3′ |
| AT5G51430 R | 5′-AACCAAACCAAAGTAAACGGAA-3′ |
| AT4G03330 F | 5′-CATGGTACCAACCAAATCACA-3′ |
| AT4G03330 R | 5′-TTAAGAGCCGTCTGAAACCAA-3′ |
| AT5G19875 F | 5′-AACACCCATTCAAAGCATACTC-3′ |
| AT5G19875 R | 5′-CCTTCTTCTTGGTCTTCTCTGG-3′ |
| AT5G67200 F | 5′-TCACAGCTGCTTCCCATATTT-3′ |
| AT5G67200 R | 5′-GGAGAATGAAGAAGAAGAAGAAGG-3′ |
| eIF4A1F | 5′-GCTGAGTTGGGAGATCGAAGTT-3′ |
| eIF4A1R | 5′–TCTGGTTCCTCCCGTGTTCT-3′ |
| Primers for real-time PCR | |
| SEP1qPCRF | 5′-CAAGCAAGTTCGGTCCATCA-3′ |
| SEP1qPCRR | 5′-TGCCAAAGCTCTATTGGTTTCA-3′ |
| SEP2qPCRF | 5′-TGCAAGGTCAGTCCCAACAA-3′ |
| SEP2qPCRR | 5′-CCCCACCAGTACTTGCTTAAGATC-3′ |
| SEP3qPCRF | 5′-TGACCAGCTCAACGATCTTCA-3′ |
| SEP3qPCRR | 5′-GCTGGAGTGGCATCTGATACC-3′ |
| SEP4qPCRF | 5′-TGTCCTTTGTGATGCTGAGATTG-3′ |
| SEP4qPCRR | 5′-ATCAACCGTCCTCGCCATAC-3′ |
| FHY3qPCRF | 5′-TTTTGAAAACAACCAAGACCCAATGGTAACAT-3′ |
| FHY3qPCRR | 5′-GCGAGGGGATGGAAGAAAGATGAC-3′ |
| CLV3qPCRF | 5′-ATGGAGAAGCAGAGAAGGCAAA-3′ |
| CLV3qPCRR | 5′-GGGTTCACATGATGGTGCAA-3′ |
| FHY1qPCRF | 5′-GATGAAAGAGGAATCATCTGGA-3′ |
| FHY1qPCRR | 5′-AATCCTCTAAGTTCTGAGTCCCA-3′ |
| AGqPCRF | 5′-CTCAGGAACTTGGAAGGCAGAT-3′ |
| AGqPCRR | 5′-CTCTTTTCTGCATGTAGTCGATTTCA-3′ |
| WUSqPCRF | 5′-GCATCGCCACCACATTCTT-3′ |
| WUSqPCRR | 5′-TGGGCAAACATGGATCATCA-3′ |
| CYCB1.3 F | 5′-TAGCTGAGTTGGGTTTGATGC-3′ |
| CYCB1.3 R | 5′-GCCTGTGTGGAATTTCAGTGT-3′ |
| MCM10 F | 5′-CCAGACAAAAGGCATCAAAGA-3′ |
| MCM10 R | 5′-GGAGTTTCCTTCCTGTGCTCT-3′ |
| RPA70C F | 5′-GATTACCTGCAGCAAACCAAG-3′ |
| RPA70C R | 5′-ACTCATAAGGGTTGGGCAGTT-3′ |
| RPA70D F | 5′-TGGATTTCGTCATTCAACGAT-3′ |
| RPA70D R | 5′-TAACCCGGAAGACATGAGATG-3′ |
| N_UBQ5 | 5′-GGTGCTAAGAAGAGGAAGAAG-3′ |
| C_UBQ5 | 5′-CTCCTTCTTTCTGGTAAACGT-3′ |
| Primers for plasmid construction | |
| FHY3cdsF | 5′-CACCATGGATATAGATCTTCGACTAC-3′ |
| FHY3cdsR | 5′-CGAGTGTCTAGACGCGTCCTCATGC-3′ |
| SEP2cdsF | 5′-CACCATGGGAAGAGGAAGAGTAGAGCTC-3′ |
| SEP2cdsR | 5′-TCACAGCATCCAGCCAGGGATGTAG-3′ |
| SEP1cdsF | 5′-CACCATGGGAAGAGGAAGAGTAGAGCTG-3′ |
| SEP1cdsR | 5′-TCAGAGCATCCACCCCGGGATGT-3′ |
| SEP2cds2F | 5′-CGGATCCATGGGAAGAGGAAGAGTAGAGCTC-3′ |
| SEP2cds2R | 5′-CCGCTCGAGTCACAGCATCCAGCCAGGGATGTAG-3′ |
| SEP3proF | 5′-GCACATCATCTCGATCAATTGTC-3′ |
| SEP3proR | 5′-CCTCTCCAGTGTCCGAAGCAT-3′ |
| amiR-sep2AI | 5′-gaTTCTAGTTGACGCTCAAGCTAtctctcttttgtattcc-3′ |
| amiR-sep2AII | 5′-gaTAGCTTGAGCGTCAACTAGAAtcaaagagaatcaatga-3′ |
| amiR-sep2AIII | 5′-gaTAACTTGAGCGTCTACTAGATtcacaggtcgtgatatg-3′ |
| amiR-sep2AIV | 5′-gaATCTAGTAGACGCTCAAGTTAtctacatatatattcct-3′ |
| amiR-sep2BI | 5′-gaTTATACTGTGTCTTGATGCAGtctctcttttgtattcc-3′ |
| amiR-sep2BII | 5′-gaCTGCATCAAGACACAGTATAAtcaaagagaatcaatga-3′ |
| amiR-sep2BIII | 5′-gaCTACATCAAGACAGAGTATATtcacaggtcgtgatatg-3′ |
| amiR-sep2BIV | 5′-gaATATACTCTGTCTTGATGTAGtctacatatatattcct-3′ |
| Primers for mutant genotyping | |
| ag-10gtF | 5′-CAATGTCTCCCAAAAGAGCCCAGGAACTT-3′ |
| ag-10gtF | 5′-GCAACAAGGCATATAGATTTAATTTG-3′ |
| fhy3-68F | 5′-TTTTGAAAACAACCAAGACCCAATGGTAACAT-3′ |
| fhy3-68R | 5′-CCGCAGCAGCCTAGTCTGCAACTG-3′ |
| wus-1gtF | 5′-AGTAGCCATGTCTATGGATCCATG-3′ |
| wus-1gtR | 5′-CCTCCACCTACGTTGTTGTAATTC-3′ |
| clv3-1gtF | 5′-TGATGAAAATGGAAAGTGAA-3′ |
| clv3-1gtR | 5′-AAAACCGATAAAGCAGAAAG-3′ |
| fhy3-4gtF | 5′-GAAGCCAAAGCTGATCCAGAAATGT-3′ |
| fhy3-4gtR | 5′-GTGGCATCTCGGTTCTCC-3′ |