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. 2016 Aug 25;11(8):e0161880. doi: 10.1371/journal.pone.0161880

Table 3. The number of sequences shared by the patients for a given clade after the exclusion of recombinant sequences.

Patient ID Genotype 3 Genotype 2
1 2 3 4 5 6 7 8 9 10 11
JYM_1 8 1
CBM_2 10
JZM_7 10
CBM_8 10
QCM_9 8 2
XAM_10 9 1
CYM_40 9
CBF_33 10
QCF_34 10
QCF_35 10
TSF_37 1 4
TCF_55 10
CYF_38 10
JZM_58 2 8
XZM_27 5 2
QCM_32 9
CYF_41 10
JZM_39 5
JZM_46 1 9
QCM_31 1 2
CYM_36 2 7
JZM_23 10
QCF_3 10

Patients with recombinant sequences are in bold.