TABLE 1 .

ChIP-seq design and results

Sample	No. of readsa	No. mappedb	% mappedc	No. of peaks whose FDR was ≤0.001d	No. of differential peakse	No. of total peaksf	Estimated fragment lengthg
PcVelA_shaking_1	34,074,601	20,835,894	61.15	6,088	1,937	764	235
PcVelA_shaking_2	29,736,045	17,177,895	57.77	6,090	1,362	1,001	231
PcVelA_shaking_input	20,383,512	18,540,910	90.96

^aTotal number of sequenced reads.

^bTotal number of reads mapped to the P. chrysogenum P2niaD18 genome.

^cFraction of tags found in peaks versus in the genomic background determined by HOMER.

^dNumber of peaks passing the FDR threshold of ≤0.001.

^eNumber of peak regions showing at least a 4-fold enrichment in the ChIP sample over the input DNA.

^fTotal number of peak regions after local background filtering and clonal filtering.

^gEstimated fragment length used for sequencing determined from tag autocorrelation analysis.