TABLE 1 .
Sample | No. of readsa | No. mappedb | % mappedc | No. of peaks whose FDR was ≤0.001d | No. of differential peakse | No. of total peaksf | Estimated fragment lengthg |
---|---|---|---|---|---|---|---|
PcVelA_shaking_1 | 34,074,601 | 20,835,894 | 61.15 | 6,088 | 1,937 | 764 | 235 |
PcVelA_shaking_2 | 29,736,045 | 17,177,895 | 57.77 | 6,090 | 1,362 | 1,001 | 231 |
PcVelA_shaking_input | 20,383,512 | 18,540,910 | 90.96 |
Total number of sequenced reads.
Total number of reads mapped to the P. chrysogenum P2niaD18 genome.
Fraction of tags found in peaks versus in the genomic background determined by HOMER.
Number of peaks passing the FDR threshold of ≤0.001.
Number of peak regions showing at least a 4-fold enrichment in the ChIP sample over the input DNA.
Total number of peak regions after local background filtering and clonal filtering.
Estimated fragment length used for sequencing determined from tag autocorrelation analysis.