Table 1. The number and frequency of microsatellites in the whole genomes of 14 sequenced Poaceae species and three other plants.
Species | Whole genome |
Microsatellite Type (%) |
||||||||
---|---|---|---|---|---|---|---|---|---|---|
Genome Size (Mb) | GC Content (%) | SSRs Number | SSRs Frequency (Number per Mb) | MNRs | DNRs | TNRs | TeNRs | PNRs | HNRs | |
Brachypodium distachyon | 271.92 | 46.21 | 51981 | 191.16 | 58.95 | 18.12 | 20.48 | 1.90 | 0.38 | 0.16 |
Oryza sativa | 373.25 | 43.55 | 135501 | 363.03 | 47.86 | 27.57 | 22.04 | 1.90 | 0.45 | 0.19 |
Setaria italica | 405.74 | 45.6 | 61931 | 152.64 | 54.24 | 21.11 | 21.83 | 2.13 | 0.44 | 0.26 |
Sorghum bicolor | 738.54 | 41.49 | 129564 | 175.43 | 43.15 | 29.44 | 21.98 | 4.14 | 0.73 | 0.56 |
Triticum monococcum | 1208.99 | 47.12 | 207430 | 171.57 | 48.79 | 32.24 | 16.54 | 2.07 | 0.24 | 0.11 |
Aegilops sharonensis | 1603.87 | 46.21 | 216638 | 135.07 | 44.02 | 33.38 | 19.94 | 2.22 | 0.27 | 0.18 |
Aegilops speltoides | 1760.38 | 45.97 | 301460 | 171.25 | 52.54 | 29.04 | 16.12 | 1.93 | 0.24 | 0.12 |
Phyllostachys heterocycla | 2051.72 | 39.35 | 302615 | 147.49 | 50.20 | 37.13 | 9.81 | 1.94 | 0.42 | 0.51 |
Zea mays | 2066.43 | 46.6 | 198939 | 96.27 | 43.18 | 32.77 | 21.53 | 1.67 | 0.54 | 0.31 |
Triticum turgidum (Strongfield) | 3119.31 | 46.16 | 451421 | 144.72 | 47.25 | 33.98 | 16.47 | 1.95 | 0.22 | 0.14 |
Triticum turgidum (Langdon) | 3139.70 | 46.76 | 472611 | 150.53 | 47.58 | 33.09 | 17.07 | 1.91 | 0.22 | 0.13 |
Hordeum vulgare | 1868.65 | 43.19 | 289981 | 155.18 | 45.47 | 32.12 | 20.16 | 1.85 | 0.27 | 0.14 |
Triticum aestivum (Version 2, 2014 May) | 10138.70 | 44.63 | 1064878 | 105.03 | 28.97 | 47.24 | 21.75 | 1.62 | 0.20 | 0.21 |
Triticum urartu | 4660.79 | 38.2 | 456045 | 97.85 | 32.32 | 43.75 | 21.77 | 1.59 | 0.15 | 0.41 |
Aegilops tauschii | 4147.41 | 37.75 | 422271 | 101.82 | 36.49 | 39.83 | 21.84 | 1.45 | 0.17 | 0.22 |
Arabidopsis thaliana | 119.67 | 36 | 50092 | 418.59 | 69.56 | 18.74 | 11.17 | 0.34 | 0.08 | 0.11 |
Populus trichocarpa | 417.14 | 32.57 | 278606 | 667.90 | 69.83 | 19.49 | 9.02 | 1.14 | 0.28 | 0.24 |
Glycine max | 973.34 | 34.1 | 405325 | 416.43 | 64.56 | 24.64 | 9.48 | 0.98 | 0.29 | 0.07 |