TABLE 6.
Comparison between traditional and 454 sequencing of silent-copy profiles for starting sequence pilE 1-81-S2
| pilS copy | % determined by: |
|||
|---|---|---|---|---|
| Criss et al. (18) | Cahoon and Seifert (34) | Helm and Seifert (38) | This study | |
| pilS 2c1 or pilS 6c1 | 34.8 | 41.7 | 40.7 | 26.27 |
| pilS 3c1 | 21.7 | 20.8 | 18.5 | 27.31 |
| pilS 3c2 | 17.4 | 8.3 | 7.4 | 1.99 |
| pilS 1c1 | 8.3 | 8.3 | 11.1 | 13.37 |
| pilS 2c4 or pilS 6c1 | 4.3 | 8.3 | ||
| pilS 3c3 | 3.3 | 2.42 | ||
| pilS 1c5 | 3.3 | 7.4 | 0.89 | |
| pilS 2c4 | 1.1 | 0.22 | ||
| pilS 1c4 | 1.1 | 0.07 | ||
| pilS 7c1 | 1.1 | 8.3 | 3.7 | 1.85 |
| pilS 6c3 | 1.1 | |||
| pilS 2c5 | 1.1 | |||
| pilS 6c1 | 1.1 | 2.34 | ||
| pilS 2c1 | 2.7 | |||
| pilS 6c2 | 0.08 | |||
| pilS 1c3 | 4.1 | 7.4 | 0.2 | |
| pilS 1c1 or pilS 3c1 | 3.7 | |||
| pilS 1c2 | 0.51 | |||
| pilS 2c2 | 0.45 | |||
| pilS 2c3 | 0.51 | |||
| pilS 2c6 | 0.8 | |||
| uss | 0.21 | |||
| Multiple events | 3.21 | |||
| Unassigned | 6.1 | |||
| Unknown | 8.46 | |||