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. 2016 Aug 26;17(1):679. doi: 10.1186/s12864-016-3018-2

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© The Author(s). 2016

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 5 — Linear genome map of three circularly permuted phages from the E4 cluster, which package chromosomes via the headful strategy. a Only Sf6 is arranged correctly. The large terminase protein is outlined in orange. Relative to phage SF6, APSE-1 and CUS-3 are arranged incorrectly and CUS-3 is also reverse-complemented. Lines connecting CUS-3 and SF6 indicate nucleotide homology. b Using DNA Master, APSE-1 and CUS-3 were rearranged and reversed complemented and these new files were reanalyzed using Phamerator for comparison. Original gene numbers were preserved