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. 2016 Aug 2;17(8):1246. doi: 10.3390/ijms17081246

Table 1.

Primer sequences used for reverse transcription-polymerase chain reaction (RT-PCR) and deletion constructs, site-directed mutagenesis and chromatin immunoprecipitation (ChIP).

Primer Sequence Strand Purpose
hST8Sia VI 5′-CCCTATTTCTGGAGGACATTGCAACCTA-3′ Sense RT-PCR
hST8Sia VI 5′-GTTGGAGGATCTGGCTGTATTCTTTG-3′ Antisense RT-PCR
β-actin 5′-CAAGAGATGGCCACGGCTGCT-3′ Sense RT-PCR
β-actin 5′-TCCTTCTGCATCCTGTCGGCA-3′ Antisense RT-PCR
GAPDH 5′-AGCCTCAAGATCATCAGCAATGTCCT-3′ Sense RT-PCR
GAPDH 5′-AAATTCGTTGTCATACCAGGAAATGAG-3′ Antisense RT-PCR
P-2660 5′-ATGGTACCCTTCTGCTGTTGCCTTGAGCCCAGC-3′ Sense Deletion
P-2660 5′-ATCTCGAGACAGCGTTCACAGGCGGCAGCGAG-3′ Antisense Deletion
P-1982 5′-ATGGTACCGGCTGTCTGGCCTGGTTGCTCCCA-3′ Sense Deletion
P-1503 5′-ATGGTACCAAGGATACCATAGGCTGGGTGACCG-3′ Sense Deletion
P-968 5′-ATGGTACCAGGCTGCCTTGTGGGGCCTGGTATA-3′ Sense Deletion
P-574 5′-ATGGTACCGCCCCTCATACCAGTTCGCTGTCCC-3′ Sense Deletion
P-240 5′-ATGGTACCCGCGCGGCGGCGGCGGCAGCAGC-3′ Sense Deletion
P-320A 5′-ATCTCGAGTTCTGCGCCCTCGCCTCGTCCCGA-3′ Antisense Deletion
P-630A 5′-ATCTCGAGCCTGGAGACCCGTTTAGCCCCTG-3′ Antisense Deletion
P-1066A 5′-ATCTCGAGGGGTGGACCTCATGGACCTCCTC-3′ Antisense Deletion
Pax-5 Mut 5′-GGAGTTGAGCTTCCGCATTCCAACCTTCAGGTGACC-3′ Sense Mutagenesis
Pax-5 Mut 5′-GGTCACCTGAAGGTTGGAATGCGGAAGCTCAACTCC-3′ Antisense Mutagenesis
NF-Y Mut 5′-GCAGAAAACTTGGAGCAATCAGCACGGAGTTGAGC-3′ Sense Mutagenesis
NF-Y Mut 5′-GCTCAACTCCGTGCTGATTGCTCCAAGTTTTCTGC-3′ Antisense Mutagenesis
hST8Sia VI 5′-AGGCAGAGTTGTGGTGTGGC-3′ Sense ChIP
hST8Sia VI 5′-TGGCAGATGACGATTCGCCGA-3′ Antisense ChIP

Primers P-2660S to P-240S were used for construction of the deletion mutants. KpnI and XhoI sites in sense and antisense primers, respectively, are underlined. The mutated nucleotides in the oligonucleotides for mutation are in boldface and italic type.