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The ENc vs. GC3s plots of RA genomes. (A) ATTCC11845; (B) RA-CH-1; (C) CH3; (D) RA-CH-2; (E) RA-GD; (F) RA-SG; (G) RA-YM; (H) Yb2; (I) RA-JLLY; (J) RA153; (K) RA17; and (L) RCAD0122. The standard curve represents the expected ENc to GC3s. Most RA genes are far away from the standard curve, showing that their codon usage pattern might be affected by other factors besides nucleotide composition. Some genes with the ENc score of 61 display no bias and use all the 61 sense codons.
