Table 3. Intragenic linkage disequilibrium and recombination events at individual genetic loci.
| Locus | S | P | F | B | LD (|D'|) | Rm |
|---|---|---|---|---|---|---|
| MS1a | 3 | 3 | 1 | 1 | 1 | 0 |
| MS3a | 3 | 3 | 0 | 0 | 1 | 0 |
| MS4a | 21 | 210 | 170 | 137 | 0.9716–0.1250X | 5 |
| MS7a | 3 | 3 | 1 | 1 | 1 | 0 |
| ITSa | 12 | 66 | 36 | 32 | 0.9924–0.0137X | 2 |
| MS1b | 7 | 21 | 4 | 4 | 1 | 0 |
| MS3b | 8 | 28 | 9 | 5 | 1 | 0 |
| MS4b | 35 | 595 | 331 | 279 | 0.9951–0.0317X | 4 |
| MS7b | 20 | 190 | 88 | 79 | 0.9724 + 0.1318X | 2 |
| ITSb | 20 | 190 | 81 | 52 | 0.9641 + 0.0053X | 3 |
S: number of segregating sites; P: number of pairwise comparisons; F: number of significant pairwise comparisons by Fisher’s exact test; B: number of significant comparisons after the Bonferroni correction; LD (|D’|): linkage disequilibrium between sites and X is the nucleotide distance (measured in kilobases; kb); Rm: minimum number of recombination events.
aAmong 101 E. bieneusi isolates from pigs.
bAmong 207 E. bieneusi isolates from pigs, humans, and baboons.