Skip to main content
. 2016 Aug 26;10(8):e0004966. doi: 10.1371/journal.pntd.0004966

Table 5. Results of linkage disequilibrium analysis based on allelic profile data from five genetic loci.

City/subpopulation No. Hd ISA PMC VD L VD > L
Changchun 34 0.6913 ± 0.0326 0.3763 < 0.001 2.62 1.1664 Y
Daqing 22 0.5740 ± 0.0267 0.6389 < 0.001 4.2961 1.4005 Y
Harbin 29 0.2739 ± 0.0737 0.4417 < 0.001 2.4508 1.1817 Y
Qiqihar 16 0.4717 ± 0.1335 0.2733 < 0.001 1.8621 1.1226 Y
Total (4 cities) 101 0.7986 ± 0.0406 0.3768 < 0.001 1.9338 0.8009 Y
Total (4 cities)a 44 0.8408 ± 0.0334 0.1441 < 0.001 1.0197 0.7022 Y
SP1 66 0.8366 ± 0.0351 0.1191 < 0.001 0.9725 0.7001 Y
SP2 39 0.1976 ± 0.0577 0.3729 < 0.001 1.8093 0.9471 Y
SP3 35 0.6971 ± 0.0605 0.4709 < 0.001 2.8327 1.0886 Y
SP4 41 0.5276 ± 0.0748 0.4866 < 0.001 3.3424 1.3644 Y
SP5 26 0.5292 ± 0.1023 0.2535 < 0.001 3.3424 1.3644 Y
Total (5 subpopulations) 207 0.8988 ± 0.0180 0.4666 < 0.001 1.2845 0.4563 Y
Total (5 subpopulations)a 105 0.9178 ± 0.0193 0.1577 < 0.001 0.6030 0.3821 Y

Hd: mean genetic diversity; ISA: standardized index of association calculated using the program LIAN 3.5; PMC: significance for obtaining this value in 1000 simulations using the Monte Carlo method; VD: variance of pairwise differences; L: 95% critical value for VD; VD > L indicates linkage disequilibrium.

a Considering isolates with the same MLG as one individual.