Table 4.

Partial F1 agreement for entities

Label	TP	FP	FN	P	R	F1
Anatomy	316	32	49	0.91	0.87	0.89
Measurement	159	1	2	0.99	0.98	0.99
Negation	23	0	3	1.00	0.88	0.94
Tumor count	65	2	5	0.97	0.93	0.95
Tumor reference	245	7	14	0.97	0.94	0.96
Tumorhood evidence	159	14	24	0.92	0.87	0.89
ALL	967	56	97	0.95	0.91	0.93