Table 1.
Data set summary of sequencing of the five small RNA and one degradome libraries
0 h | 12 h | 24 h | 36 h | 72 h | ||
Small RNA data | Clean reads | 14,412,672 | 14,045,040 | 10,736,476 | 12,983,765 | 10,245,283 |
Mapped reads | 9,362,670(64.96 %) | 8,479,342(60.37 %) | 6,700,319(62.41 %) | 8,378,691(64.53 %) | 6,474,276(63.19 %) | |
Unique mapped | 3,347,363(100) | 4,084,098(100) | 3,575,988(100) | 4,002,600(100) | 3,497,201(100) | |
Match miRNA | 3,347(0.10 %) | 5,309 (0.13 %) | 4,648(0.13 %) | 4,803(0.12 %) | 3,847(0.11 %) | |
Unannotation | 3,047,439(91.04 %) | 3,725,514(91.02 %) | 3,248,070(90.83 %) | 3,633,160(90.77 %) | 3,152,027(90.13 %) | |
Total | Unique | |||||
Degradome data | Clean Reads | 13,852,945(100) | 4,362,200(100) | |||
Mapped reads | 13,787,820(99.53 %) | 4,333,854(99.35 %) | ||||
Transcript Mapped | 7,659,047(55.29 %) | 2,018,752(46.28 %) | ||||
Unannotation | 6,193,898(44.71 %) | 2,343448(53.72 %) |