Table 1.
CD1 and MR1 gene numbers
| Common name | Genome | Binomial species name | CD1a | CD1b | CD1c | CD1d | CD1e | Total CD1 | MR1 |
|---|---|---|---|---|---|---|---|---|---|
| Alpaca | vicPac2 | Vicugna pacos | 1 | 1 | 1 | 1 | 1 | 5 | 1 |
| Bonobo | panPan1 | Pan paniscus | 1 | 1 | 1 | 1 | 1 | 5 | 2 |
| Chimpanzee | panTro4 | Pan troglodytes | 1 | 1 | 1 | 1 | 1 | 5 | 2 |
| Dog | CanFam3 | Canis lupus | 9 | 1 | 1 | 1 | 1 | 13 | 1 |
| Dolphina | turTru2 | Tursiops truncatus | 0 | 1 | 0 | 0 | 0 | 1 | 0 |
| Elephant | loxAfr3 | Loxodonta africana | 1 | 2 | 1 | 1 | 1 | 6 | 1 |
| Horse | equCab2 | Equus caballus | 9 | 2 | 2 | 1 | 2 | 16 | 1 |
| Human | hg38 | Homo sapiens | 1 | 1 | 1 | 1 | 1 | 5 | 2 |
| Megabat | pteVam1 | Pteropus vampyrus | 3 | 1 | 1 | 0 | 1 | 6 | 1 |
| Microbat | myoLuc2 | Myotis lucifugus | 17 | 2 | 0 | 5 | 2 | 26 | 1 |
| Mouse | mm10 | Mus musculus | 0 | 0 | 0 | 2 | 0 | 2 | 1 |
| Panda | ailMel1 | Ailuropoda melanoleuca | 8 | 1 | 1 | 1 | 1 | 12 | 1 |
| Pig | susScr3 | Sus scrofa | 2 | 1 | 1 | 1 | 2 | 7 | 1 |
| Rabbit | oryCun2 | Oryctolagus cuniculus | 5 | 2 | 0 | 1 | 2 | 10 | 0 |
| Rhesus macaque | rheMac3 | Macaca mulatta | 2 | 1 | 1 | 1 | 1 | 6 | 2 |
| Slotha | choHof1 | Choloepus hoffmanni | 1 | 0 | 0 | 1 | 0 | 2 | 1 |
For each of the indicated mammalian genomes, a list of CD1 and MR1 genes as determined by BLAST-based searches was merged with a list of Ensembl-annotated CD1 and MR1 genes when available (adapted from (Reinink and Van Rhijn 2016)). Redundancies (genes with identical genomic location) were removed
aThe dolphin and sloth genomes are not completely assembled and consist of relatively small contigs, which may have led to the fragmentation of CD1 or MR1 genes and subsequent failure of identification