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. 2016 Aug 29;7:1340. doi: 10.3389/fmicb.2016.01340

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Copyright © 2016 Chen, Zhang, Guo, Dai, Liu, Xi, Wang, Song, Wang, Zhu, Huang and Huang.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Maximum-likelihood phylogenetic tree based on partial 16S rRNA gene sequences illustrating the relationships among all the isolates and representative actinobacterial sequences from the pyrosequencing data set. The tree was constructed using the GRT+G+I model. Firmicutes was set as the outgroup. Taxonomic assignments of the sequences were based on both the RDP and SILVA databases. The tree is displayed at order level. Numbers at branch nodes are percentages of bootstrap replicates of 100 resamplings (only values above 50% are shown). Numbers in the parentheses following each order or clade indicate the relative abundance of pyrosequencing reads and isolates, respectively. The bar represents 0.1 substitutions per nucleotide position.