TABLE II.
Identification of Biomarkers in Dataset 4 Using Several Filter Methods
| Fold Change | T-Test | Rank Sum | SAM | Rank Products | mRMR-D | mRMR-Q |
|---|---|---|---|---|---|---|
| CCL3L1 | GSK3B | ALKBH5 | ALKBH5 | HBB | GSK3B | GSK3B |
| CCL4 | CMKLR1 | GSK3B | GSK3B | CCL3L1 | CMKLR1 | EPC1 |
| IL1B | ALKBH5 | GI_21040319-A* | CCL3L1 | CCL4 | CAMK1D | NAA16 |
| IL8 | ADRBK2 | GI_38569443-A* | IER3 | HBA2 | ARL6IP6 | RHOT1 |
| TNF | ARL6IP6 | GI_25777700-A* | ZBTB7A | IL8 | TMOD3 | GI_42657510-S* |
| GOS2 | SDHD | ARL6IP6 | CCL4 | HLA-DRB3 | ALKBH5 | KCTD18 |
| IER3 | UHMK1 | GMEB1 | CMKLR1 | HLA-DRB1 | KCTD18 | LRRC43 |
| CCL3 | GOLIM4 | CMKLR1 | GOS2 | DEFA1 | UHMK1 | EIF4G3 |
| IER2 | GI_21040319-A* | EIF4G3 | CD83 | IL1B | GI_38569443-A* | KRCC1 |
| CD83 | GMEB1 | SRSF10 | GI_21040319-A* | DEFA3 | GI_21464106-A* | TMSL3 |
| EGR1 | GI_25777700-A* | SLC25A11 | IER2 | HLA-DRB5 | EIF4G3 | GI_42660285-S* |
| DUSP2 | EIF4G3 | DEK | TNF | HLA-DQA1 | GI_42660285-S* | CAMK1D |
| PPP1R15A | SF3B14 | TAF4 | ADRBK2 | IER3 | CD58 | UHMK1 |
| HBB | SNRPD3 | SDHD | IL1B | GOS2 | KRCC1 | CMKLR1 |
| NFKBIA | SRSF10 | CNNM3 | SDHD | HBA1 | GI_5803174-S* | GI_5803174-S* |
| TNFAIP3 | TNPO1 | SETX | GI_25777700-A* | EGR1 | TNPO1 | GI_21464106-A* |
| GI_33386702-S* | PCMTD2 | CAMK1D | ARL6IP6 | GI_33386702-S* | GI_37550554-S* | ALKBH5 |
| GI_31088849-S* | GI_38569443-A* | TGFBRAP1 | CCL3 | TNF | SLC25A11 | SF3B14 |
| BTG2 | DEK | GI_37550554-S* | DUSP2 | GI_31088849-S* | GI_4826967-S* | GI_41120019-S* |
| GI_37550226-S* | SLC25A11 | PLEKHF2 | SDCBP | GZMH | TAF4 | C9orf102 |
Highlighted genes are some examples that occur within the top 20 genes for at least three methods and may be linked to cardiovascular disease.
*
Microarray probe names are used when gene symbols are not available.