Table 1.

Comparison of genes from the haplotype 19D assembly with genes from haplotype 19B from the zebrafish reference genome

Haplotype D gene*	Identity, %†	Haplotype B gene‡	Chromosome§
daxx	99	daxx	19
tapbp	98	tapbp	19
mhc1uga	49	mhc1uba	19
tap2d	65	tap2a	19
psmb9b	86	psmb9a	19
psmb13b	71	psmb13a	19
psmb8f	64	psmb8a	19
tap2e	50	tap2a	19
brd2a	100	brd2a	19
hsd17b8	99	hsd17b8	19

^*Sequences from core MHC locus of CG2 zebrafish assembly (haplotype 19D).

^†Levels of pairwise percentage identity calculated with BLAST using predicted amino acid sequences.

^‡Most closely matched genes identified from Zv9 zebrafish reference genome (haplotype 19B).

^§Chromosome location.