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. 2013 Nov 6;2(4):284–303. doi: 10.3390/microarrays2040284

Table A1.

Eligibility of samples.

ID call rate var. wave var. per_SNP var. Chr1 Chr2 Chr3 Chr4 Chr5 Chr6 Chr7 Chr8 Chr9 Chr10 Chr11 Chr12 Chr13 Chr14 Chr15 Chr16 Chr17 Chr18 Chr19 Chr20 Chr21 Chr22
3 98.33 0.068 0.001 0.067 2 0 0 2 2 0 0 0 0 0 0 11 0 1 0 0 2 2 0 0 0 102
15 96.02 0.144 0.001 0.142 10 4 38 8 11 2 0 50 16 11 8 150 13 0 78 22 11 21 19 0 4 0
36 96.00 0.243 0.004 0.238 506 845 678 751 1,376 503 977 974 722 385 379 639 593 232 541 752 356 397 364 225 262 203
38 95.76 0.183 0.001 0.181 179 80 102 48 140 80 91 268 33 84 122 44 27 144 20 47 114 41 155 0 40 20
48 96.16 0.174 0.007 0.167 0 39 60 141 23 42 90 69 56 5 10 59 110 18 32 361 29 32 0 94 15 55
49 94.81 0.174 0.007 0.167 203 31 35 111 40 28 33 22 14 6 22 9 8 15 41 0 0 23 12 0 7 0
50 97.14 0.103 0.002 0.101 46 11 0 14 22 242 2 0 8 0 0 65 0 0 11 2 3 0 45 0 2 2
62 97.92 0.090 0.003 0.087 0 14 0 14 3 19 15 11 2 2 0 0 0 0 0 0 6 16 0 0 0 2
71 93.92 0.202 0.002 0.200 667 490 326 78 149 40 269 252 215 116 45 231 96 163 142 266 134 148 248 38 97 50
76 93.71 0.229 0.002 0.226 511 251 200 65 229 59 336 467 352 422 457 233 85 185 170 252 285 161 462 112 167 49
97 89.52 0.291 0.008 0.282 3,123 5,467 11,613 3,795 6,729 4,870 5,374 4,898 4,455 4,169 5,721 6,492 3,486 3,020 3,709 4,031 4,120 3,177 3,581 2,466 1,775 1,281
101 97.85 0.077 0.002 0.075 0 0 0 0 0 0 0 0 0 0 0 0 0 9 0 0 0 0 0 2 0 0
111 96.51 0.175 0.003 0.172 70 76 14 49 287 187 29 76 64 266 105 47 61 17 15 20 0 74 10 136 6 21
112 94.70 0.147 0.011 0.134 2,378 2,988 2,743 2,514 2,823 4,455 2,774 3,014 2,837 2,707 4,227 3,054 2,315 1,595 1,905 1,087 2,085 2,044 1,562 650 580 602
129 96.61 0.139 0.003 0.135 7 31 51 9 19 35 3 94 30 77 23 2 3 10 0 96 0 2 74 0 22 0
131 96.45 0.199 0.002 0.196 319 229 139 314 108 125 248 304 172 363 279 68 96 93 118 212 182 71 83 28 13 28
141 96.44 0.121 0.017 0.101 266 121 174 173 147 64 195 121 258 24 43 291 45 36 59 202 105 96 208 90 86 72
144 94.72 0.176 0.005 0.170 251 746 130 464 250 328 253 410 390 139 799 55 553 63 193 178 52 286 195 9 15 45
168 94.36 0.315 0.036 0.275 5,205 5,382 5,272 4,479 4,337 5,737 6,682 4,504 3,966 2,627 2,901 5,294 2,492 3,065 2,487 3,126 2,559 2,658 2,179 1,405 961 948
182 95.02 0.316 0.002 0.313 1,189 1,988 2,051 1,096 2,301 2,991 1,814 2,365 1,408 687 1,144 1,314 839 654 689 815 569 1,953 427 517 456 377
188 90.12 0.474 0.011 0.461 14,534 15,554 28,322 10,245 10,904 16,212 12,471 14,300 6,642 6,499 8,681 9,241 5,595 6,784 7,503 5,150 6,048 7,028 3,978 2,417 3,536 2,274
189 97.32 0.097 0.012 0.084 120 34 155 12 35 41 74 69 0 29 47 34 16 6 1 0 0 0 30 0 35 2
193 97.34 0.093 0.004 0.088 53 3 0 3 0 0 0 5 71 6 2 0 47 0 0 0 0 0 0 0 0 0
412 97.51 0.092 0.006 0.086 0 0 62 2 0 0 20 0 2 14 0 10 22 0 0 0 2 2 0 0 0 4
415 98.23 0.103 0.001 0.102 5 11 0 5 3 10 35 0 2 0 0 2 0 0 0 0 0 9 0 0 0 2
421 96.73 0.165 0.055 0.102 0 7 0 0 0 5 28 0 0 0 0 0 0 2 0 0 0 4 0 0 0 0
422 96.10 0.074 0.002 0.073 37,996 36,654 32,343 29,935 29,248 29,062 23,198 24,951 21,457 22,172 22,247 21,574 15,560 14,542 14,525 12,574 10,444 14,095 8,616 10,294 7,218 4,456
430 96.39 0.160 0.019 0.138 10,614 10,096 9,196 16,278 15,383 7,959 7,758 9,465 6,757 6,295 6,291 6,559 4,955 3,487 2,491 3,459 3,074 5,404 1,525 2,399 3,569 1,187
438 89.76 0.463 0.057 0.399 45,981 56,162 42,403 45,750 55,976 37,901 44,212 34,069 30,387 26,842 26,461 38,930 23,963 20,800 18,258 19,160 16,624 18,367 9,637 13,485 8,790 5,479
442 97.82 0.084 0.008 0.076 486 382 0 0 14 0 9 57 2 0 33 4 0 0 0 0 0 0 67 0 4 3
451 95.96 0.205 0.004 0.200 109 154 49 363 75 361 107 213 124 100 85 150 124 20 63 4 60 116 50 59 0 19
461 80.86 0.706 0.007 0.696 64,822 74,302 41,655 64,993 56,987 58,825 49,369 55,433 45,357 47,372 35,753 49,377 30,870 27,158 25,448 29,590 14,637 22,231 15,372 19,289 12,431 8,971
613 97.64 0.090 0.001 0.088 2 6 3 7 4 0 49 15 0 0 22 2 10 2 0 0 0 0 7 0 2 0
647 95.49 0.157 0.002 0.154 15 1 30 166 0 47 9 0 6 45 41 58 0 5 28 41 24 0 14 4 4 11
653 98.22 0.079 0.004 0.074 12 2 14 1,618 26 7 12 7 0 9 0 0 0 0 0 2 0 0 0 0 4 4
665 97.32 0.123 0.037 0.082 5,071 8,140 6,289 5,520 6,417 6,816 5,890 6,894 4,238 5,326 4,503 5,246 2,641 2,696 2,301 1,766 1,445 4,211 1,699 1,399 2,448 932
670 96.74 0.152 0.043 0.105 3,160 4,486 3,895 3,913 3,812 3,038 3,309 3,676 2,359 2,112 3,327 2,791 1,591 1,595 1,142 969 1,028 2,043 543 1,213 1,034 286
675 97.67 0.084 0.009 0.074 0 0 3 0 4 1 3 37 0 0 58 4 0 0 0 11 0 0 48 0 0 0
676 98.15 0.078 0.001 0.077 0 0 0 0 45 2 18 0 0 0 14 4 0 0 0 0 0 0 0 0 0 0
677 95.58 0.208 0.003 0.204 25 149 161 54 77 57 267 157 38 210 63 13 52 64 34 44 57 137 121 16 56 75
693 95.72 0.133 0.005 0.128 4 73 18 6 31 12 15 27 7 0 10 8 73 14 10 0 5 3 20 2 0 12
715 97.44 0.095 0.006 0.089 3 5 0 0 4 0 471 0 2 0 0 0 0 4 0 4 0 24 0 4 0 0
717 96.60 0.134 0.001 0.132 0 2 22 21 29 41 0 17 0 6 57 10 0 2 0 15 0 0 34 0 0 0
729 94.75 0.189 0.001 0.187 115 23 115 184 49 55 84 91 42 45 101 111 16 57 103 80 57 61 192 0 22 0
733 95.84 0.198 0.009 0.188 23 28 84 218 218 0 306 180 40 34 59 11 32 3 33 62 108 6 8 38 46 0
735 95.28 0.173 0.003 0.169 94 21 111 290 81 41 116 14 220 79 0 87 47 31 34 43 16 13 181 0 0 22
742 96.83 0.114 0.013 0.099 0 0 3 0 2 0 1 0 4 0 2 0 0 15 8 2 18 0 137 0 0 0
744 97.26 0.108 0.017 0.089 0 135 126 332 73 148 263 0 135 31 52 150 180 34 15 40 0 166 114 0 94 0
746 95.72 0.253 0.004 0.248 283 895 350 378 287 388 227 723 594 712 229 559 323 206 98 478 398 689 341 73 184 173
750 97.15 0.114 0.015 0.097 2,389 642 1,750 1,501 1,370 1,792 707 1,440 997 615 674 750 559 225 544 63 187 814 458 177 184 0
752 97.80 0.103 0.004 0.099 88 121 119 155 196 83 118 187 93 206 66 147 27 35 50 41 32 70 15 36 27 25
796 94.23 0.247 0.002 0.244 2,165 482 568 1,127 539 263 360 591 440 697 908 806 106 630 256 498 262 565 127 275 67 48
1020 98.21 0.075 0.001 0.074 2 0 0 0 2 1 2 0 0 0 0 3 0 0 0 0 0 0 8 0 16 0
1022 97.77 0.082 0.001 0.081 6 16 2 30 2 2 2 0 12 0 11 0 0 0 0 0 0 1 0 0 0 0
1026 98.34 0.066 0.001 0.064 1 0 0 0 5 0 0 0 0 0 2 0 0 11 9 0 0 0 3 0 0 0
1028 97.49 0.089 0.001 0.088 9 0 0 0 40 49 0 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0
1029 98.54 0.062 0.001 0.060 3 64 0 0 0 0 0 0 0 0 1 0 2 50 0 25 0 2 0 0 0 0
1033 97.58 0.087 0.001 0.085 0 0 83 0 0 0 2 0 70 4 4 0 0 0 8 0 0 0 0 0 0 0
1034 97.50 0.092 0.010 0.081 0 0 0 2 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
1037 98.26 0.068 0.001 0.067 8 5 2 50 2 6 2 12 0 2 1 0 2 0 0 3 54 13 2 2 0 0
1040 96.56 0.114 0.001 0.113 9 0 17 53 3 1 4 0 0 0 0 0 17 0 0 0 0 0 0 0 1 0
1041 97.16 0.094 0.001 0.093 0 0 0 4 2 2 0 0 0 0 13 3 0 0 0 0 0 0 0 0 0 0
1042 97.46 0.087 0.003 0.084 15 14 19 20 11 28 10 19 4 2 2 6 8 4 18 4 2 24 2 0 2 0
1056 97.11 0.098 0.003 0.095 2 0 2 2 0 2 0 0 0 0 0 15 0 4 0 0 35 0 10 0 0 18
1063 98.31 0.075 0.002 0.072 0 2 169 10 0 0 29 0 0 0 0 0 2 0 13 0 0 0 2 0 0 0
1065 98.23 0.068 0.003 0.065 0 4 2 7 0 0 0 2 0 0 0 0 8 0 0 0 0 58 4 0 0 0
1088 97.64 0.092 0.004 0.088 53 23 61 45 8 90 26 76 32 44 50 71 34 6 15 54 0 22 13 4 9 39
1091 96.69 0.138 0.029 0.105 7,631 6,080 7,146 6,512 7,299 4,006 4,952 6,666 4,169 2,579 3,990 4,012 2,388 2,194 1,415 2,613 1,030 2,828 646 3,697 1,862 451
1147 97.96 0.079 0.002 0.077 5 76 4 8 0 0 4 4 16 0 2 3 2 0 2 2 0 7 190 0 0 0
1151 97.90 0.087 0.001 0.086 2 4 0 0 3 0 0 8 0 4 9 0 0 0 0 0 2 0 0 0 11 2
2110 93.16 0.343 0.010 0.332 671 3,307 3,614 1,414 3,548 3,035 2,775 2,070 1,581 2,718 2,153 2,054 1,573 1,426 995 1,173 1,584 1,358 662 285 971 581
2134 95.73 0.134 0.008 0.125 144 52 81 51 51 100 28 88 70 0 35 77 3 55 7 16 56 7 41 2 18 1
2144 97.12 0.093 0.004 0.089 2 5 8 1 4 0 4 0 2 0 14 4 0 0 0 3 0 0 0 2 0 0
2240 94.48 0.299 0.004 0.294 488 1,656 1,019 1,734 2,180 1,605 754 1,750 1,179 531 916 1,728 916 751 643 921 501 427 713 356 339 374
2355 94.50 0.258 0.026 0.229 1,870 1,799 1,422 741 1,491 2,829 1,663 1,353 829 1,500 1,360 1,714 654 677 1,262 767 1,420 1,061 842 826 464 452
2406 94.78 0.195 0.011 0.183 67 125 136 122 201 80 142 109 62 61 5 51 70 68 34 7 60 83 122 53 43 0
D_062 94.17 0.322 0.003 0.318 772 838 547 536 4,419 436 711 496 239 308 219 582 319 215 222 81 62 540 101 86 0 94