. Author manuscript; available in PMC: 2016 Aug 30.

Published in final edited form as: Obesity (Silver Spring). 2015 May 9;23(6):1267–1278. doi: 10.1002/oby.21059

Table 2.

Expression of select individual genes by differential analysis.

EAT versus SAT
	Gene name	Fold Change	P value	FDR	Mean Expression
	Gene name	Fold Change	P value	FDR	EAT (n = 11)	SAT (n = 11)
Enriched in EAT	ITLN1	34.8	<0.001	0.011	1726 ± 1559	50 ± 11
	CCL21	11.1	<0.001	0.007	5633 ± 3157	506 ± 346
	KCNN3	2.47	<0.001	0.007	180 ± 47	73 ± 10
	PLA2G2A	2.23	0.001	0.020	855 ± 341	384 ± 214
	PLAT	1.84	<0.001	0.011	1037 ± 302	563 ± 184
	KCNA3	1.65	0.004	0.049	265 ± 87	161 ± 53
	KCNK17	1.57	<0.001	0.007	124 ± 22	79 ± 7
	CXCR5	1.31	0.001	0.017	42 ± 9	32 ± 3
	CCR2	1.43	0.002	0.030	127 ± 25	89 ± 20
	ADORA1	1.16	0.044	0.238^*	96 ± 16	82 ± 13
Enriched in SAT	MAOB	2.73	<0.001	0.007	318 ± 102	870 ± 158
	LOXL2	2.02	<0.001	0.007	230 ± 52	467 ± 124
	LOXL4	1.63	<0.001	0.007	138 ± 20	226 ± 43
	SMAD7	1.51	0.003	0.038	206 ± 64	312 ± 78
	USP30	1.43	<0.001	0.007	168 ± 27	240 ± 33
	USP14	1.31	<0.001	0.007	839 ± 98	1099 ± 166
	SOD1	1.31	<0.001	0.007	1337 ± 198	1747 ± 206
	SMAD2	1.23	<0.001	0.011	727 ± 70	897 ± 94
	TGFBR3	1.19	0.003	0.042	1775 ± 221	2120 ± 247
	SMURF1	1.17	0.003	0.038	487 ± 69	572 ±39
EATCAD versus EATVal
					EATCAD (n = 6)	EATVal (n = 5)
Enriched in EATCAD	TECRL	14.6	0.022	0.999^*	147 ± 331	10 ± 1
	CTSE	2.51	0.034	0.999^*	247 ± 144	98 ± 44
	FLRT3	2.48	0.005	0.999^*	182 ± 111	74 ± 30
	TRDN	2.43	0.028	0.999^*	139 ± 92	58 ± 23
	HSPB7	2.25	0.005	0.925^*	722 ± 183	321 ± 160
Enriched in EAT-Val	O3FAR1	1.73	<0.001	0.114^*	159 ± 25	274 ± 58
	CD33	1.73	<0.001	0.114^*	233 ± 49	402 ± 75
	ENG	1.35	<0.001	0.114^*	1431 ± 204	1927 ± 312
	CLEC9A	1.28	<0.001	0.114^*	22 ± 1	28 ± 6
	MAP3K1	1.22	<0.001	0.114^*	834 ± 76	1019 ± 123

The signal intensity for each individual gene was measured by microarray and analyzed using GenePattern differential analysis. Expression data are presented as mean ± SD. A 2-sided student’s t-test of paired samples was used to calculate p-values in GenePattern as 2^{signal(EAT-SAT)} or 2^{signal(EATCAD-EATVal)}. Select genes from this differential analysis are listed with their p-values, FDR and fold changes.

indicates genes with an FDR ≥5% that were included to facilitate discussion.