Table 2.
Polymorphism | Forward primer | Reverse primer | Annealing temperature |
---|---|---|---|
CA-SSR1 | 5′-ACAAGCTTTTAAAGAGTTTCTTGT-3′ | 5′-AGGCAATGTGTTAGTACACA-3′ | 59°C, 35 cycles |
-216G/T | 5′-GCTTGGTCCTCTTCGGCATCT-3′ | 5′-CCGTCTTGACCAGTCGCTTA-3′ | 68°C–60°C decreasing 1°C/cycle for eight cycles, 59°C, 30 cycles |
R497K | 5′-TTAGATGCAGCATTATTAGCC-3′ | 5′-CGGGTGATACATCATTAGAAA-3′ | 59°C, 35 cycles |
Abbreviations: CA-SSR1, CA simple sequence repeat in intron 1; PCR, polymerase chain reaction.