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. 2015 Sep 17;32(1):17–24. doi: 10.1093/bioinformatics/btv548

Fig. 6.

Fig. 6.

Violations of the single-orientation assumption. (a) In an inverted repeat, a sequence (contig A) is included in the reconstruction twice in opposite orientations. (b) In a polyploid genome, an inverted haplotype is a sequence (contig B) included in opposite orientations on different haplotypes