Table 1.
Gene | Protein isoform | Primer sequence | Restriction site | Protein variant (Acc. No./GI) | Encoded by transcript variant (Acc. No./GI): | ||
---|---|---|---|---|---|---|---|
eIF4E1 | 1 | fwd | CGAAGAAGATCTATGGCGACTGTCGAACCGG | BglII |
NP_001959.1 GI:4503535 |
1 |
NM_001968.3 GI:194578905 |
rev | GCGCGGTACCTTAAACAACAAACCTATTTTTAGTGGTGG | Acc65I | |||||
3 | fwd | TTGTCGACATGTTGGACCTGACCTCCCGC | SalI |
NP_001124150.1 GI:194578907 |
3 |
NM_001130678.1 GI:194578906 |
|
rev | GCGCGGTACCTTAAACAACAAACCTATTTTTAGTGGTGG | Acc65I | |||||
eIF4E2 | A | fwd | GTGTCGACATGAACAACAAGTTCGACGCTTTGAAAGATG | SalI |
NP_004837.1 GI:4757702 |
1 |
NM_004846.3 GI:545309374 |
rev | GGGTACCTCATGGCACATTCAACCGCGGCTTC | Acc65I | |||||
C | fwd | GTGTCGACATGAACAACAAGTTCGACGCTTTGAAAGATG | SalI |
NP_001263265.1 GI:545309640 |
3 |
NM_001276336.1 GI:545309639 |
|
rev | CCGGTACCTCACAATGTGATTTTTGTATTTCGAAAGC | Acc65I | |||||
CRA_a | fwd | GTGTCGACATGAGTTTGAAAGATGATGAC | SalI |
EAW71007.1 GI:119591413 |
not annotated yet | ||
rev | CCGGTACCTCACAATGTGATTTTTGTATTTCGAAAGC | Acc65I | |||||
eIF4E3 | A* | fwd | CGGAGAAAATGGCGCTGCCC | X |
NP_001128123.1 GI:197382708 |
1 |
NM_001134651.1 GI:197382707 |
rev | ACTGTGGACGTGCTGTCCTTGG | X | |||||
B | fwd | GTGTCGACATGAGAGGAGAGAGGCGACCACTTTG | SalI |
NP_775495.1 GI:27659734 |
2 |
NM_173359.4 GI:197382627 NM_001134649.2 GI:544583504 NM_001134650.1 GI:197382663 NM_001282886.1 GI:544583491 |
|
NP_001128121.1 GI:197382649 |
3 | ||||||
NP_001128122.1 GI:197382664 |
4 | ||||||
rev | CCGGTACCTTAGTGTTTTCCACGTCCACCTTCAAAAG | Acc65I |
NP_001269815.1 GI:544583492 |
5 |
* Indicates primers used for the amplification of the 3′-incomplete coding sequence of eIF4E3_A from HEK293-cell cDNA; the complete ORF was obtained in subsequent cloning steps