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. 2016 Aug 31;7(1):17. doi: 10.1186/s13100-016-0073-9

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© The Author(s). 2016

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 5 — Phylogenetic analysis of dictyostelid non-LTR retrotransposons. Alignment of RT domains was generated with ClustalX and analyzed using the Maximum Likelihood method. All positions containing gaps and missing data were eliminated. The tree is drawn to scale with branch lengths in the same units as those of the evolutionary distances used to infer the phylogenetic tree. There were a total of 227 amino acid positions in the final dataset. Bootstrap support (percentage from 1000 trials) is indicated next to each node