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. 2016 Jul 27;28(8):1815–1827. doi: 10.1105/tpc.16.00304

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© 2016 American Society of Plant Biologists. All rights reserved.

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Figure 6. — The 24-Nucleotide sRNAs from the 5′ Upstream Regions of C. rubella MEGs Map to Multiple Positions in the Genome.

Darker color reflects increased density. Connecting black lines in the middle of the ideogram represent positions where the 24-nucleotide sRNAs can be mapped. Red dots in the most inner circle represent MEGs to aid visualization. Mapping of extracted 24-nucleotide sRNAs was done by BLAT using an optimized mapping score set to 10 to accommodate 24-nucleotide alignment. IG, imprinted genes; blue strokes, PEGs; red strokes, MEGs; GD, gene density; RD, repeat element density.