Table 2.
ITS rRNA probes with signal intensities above the threshold. The signal intensities in the two experiments (Myk1 and Myk2, cf. GEO GSE28018) are given for each probe. The fourth column indicates the taxonomic group actually targeted by the probe, as revealed by a BLAST search. The number of sequences among the perfect matches, deposited under matching (matches), contradicting (outliers), or lower level (ambiguities) taxonomic names is noted in parentheses. The ordinal affiliation of the target group is given in the last column.
| Probe ID | Signal intensity (Myk1) | Signal intensity (Myk2) | Target group(matches/outliers/ambiguities) | Order |
|---|---|---|---|---|
| * Two probe sequences targeting species of Eurotiales clustered among the Sordariomycetes-specific sequences, one matching Paecilomyces carneus, the other Paecilomyces lilacinus (Eurotiales) and Nalanthamala vermoesenii (Hypocreales, Sordariomycetes). As several of the anamorphic Paecilomyces spp. were shown to correspond to Hypocrealean teleomorphs [16], these two Paecilomyces spp. likely represent Hypocrealean anamorphs as well. | ||||
| ITS_01_50002900 | 107.7 | 156.4 | Cladosporium (199/1/300) | |
| ITS_01_50005177 | 92.2 | 160.3 | Cladosporium (200/1/299) | |
| ITS_01_50001997 | 90.6 | 90.7 | Cenococcum (89/0/255) | Dothideomycetes inc. sed. |
| ITS_01_50002490 | 140.7 | 221.3 | Myxotrichaceae (8/2/6) | |
| ITS_01_50005012 | 86.8 | 112.9 | Aspergillus (1/0/0) | |
| ITS_01_50005015 | 52.1 | 92.1 | Aspergillus (1/0/0) | |
| ITS_01_50006139 | 49.2 | 78.1 | Aspergillus (72/0/27) | |
| ITS_01_50005104 | 185.6 | 248.2 | Aspergillus (1/0/0) | |
| ITS_01_50005004 | 104.2 | 174.0 | Paecilomyces carneus (7/2/4) * | |
| ITS_01_50005051 | 66.9 | 126.2 | Penicillium (1/0/0) | |
| ITS_01_50005142 | 74.8 | 106.9 | Penicillium (1/0/0) | |
| ITS_01_50005035 | 88.1 | 127.0 | Nalanthamala vermoesenii (59/13/3) * | Eurotiales/Hypocreales |
| ITS_01_50005171 | 98.1 | 161.2 | Cordycipitaceae (116/0/5) | |
| ITS_01_50005106 | 87.7 | 152.6 | Cordycipitaceae/Ophiocordycipitaceae (167/2/23) | |
| ITS_01_50002531 | 98.5 | 130.5 | Fusarium (324/13/163) | |
| ITS_01_50002532 | 100.5 | 149.8 | Fusarium (321/4/50) | |
| ITS_01_50005175 | 99.0 | 162.1 | Fusarium (324/13/163) | |
| ITS_01_50005053 | 108.7 | 189.5 | Fusarium (277/6/122) | |
| ITS_01_50005105 | 87.3 | 131.0 | Isaria / Paecilomyces (40/2/1) | |
| ITS_01_50005159 | 95.8 | 162.3 | Isaria cateniannulata (1/0/0) | |
| ITS_01_50005158 | 106.7 | 166.4 | Isaria cateniannulata/Evlachovaea (26/2/3) | |
| ITS_01_50002492 | 102.7 | 175.2 | Isaria (17/4/0) | |
| ITS_01_50005170 | 97.8 | 181.4 | Isaria (17/4/0) | |
| ITS_01_50005041 | 81.5 | 111.5 | Nalanthamala psidii (9/5/0) | |
| ITS_01_50005176 | 95.1 | 139.8 | Torrubiella luteorostrata (3/2/0) | |
| ITS_01_50005161 | 90.8 | 160.3 | Torrubiella luteorostrata (3/0/0) | |
| ITS_01_50005153 | 81.0 | 158.6 | Leptosphaeria (11/6/40) | |
| ITS_01_50001996 | 66.1 | 97.3 | Pleosporaceae (259/2/239) | |
| ITS_01_50006165 | 108.5 | 147.2 | Pleosporaceae (260/4/236) | |
| ITS_01_50001499 | 75.7 | 120.6 | Pleosporales (302/7/191) | |
| ITS_01_50006164 | 78.5 | 121.9 | Pleosporales (286/10/179) | |
| ITS_01_50006166 | 79.0 | 108.2 | Pleosporales (306/8/186) | |
| ITS_01_50001886 | 106.3 | 179.1 | Chaetomiaceae/Lasiosphaeriaceae (69/1/121) | |
| ITS_01_50005102 | 98.9 | 158.6 | Chaetomiaceae/Lasiosphaeriaceae (69/2/120) | |
| ITS_01_50003051 | 67.5 | 141.6 | Arthrinium (96/6/16) | Sordariomycetes inc. sed. |
| ITS_01_50003052 | 66.0 | 147.5 | Pestalotiopsis (88/4/7) | |
| ITS_01_50005179 | 60.2 | 103.8 | Pestalotiopsis (89/3/7) | |
| ITS_01_50000693 | 529.3 | 516.2 | Amanita constricta (1/0/0) | |
| ITS_01_50000694 | 497.0 | 600.8 | Amanita constricta (2/0/2) | |
| ITS_01_50000692 | 479.4 | 576.5 | Amanita liquii (2/0/0) | |
| ITS_01_50000709 | 92.5 | 176.3 | Amanita virosa (1/0/0) | |
| ITS_01_50002501 | 60.9 | 84.7 | Hygrocybe (1/0/0) | |
| ITS_01_50002530 | 83.5 | 88.0 | Lactarius (9/1/2) | |
| ITS_01_50001012 | 90.0 | 88.7 | Russula (3/0/0) | |
| ITS_01_50000049 | 69.7 | 64.0 | Russulaceae (1/0/0) | |
| ITS_01_50001973 | 83.2 | 83.1 | Russulaceae (1/0/0) | |
| ITS_01_50001863 | 67.8 | 116.9 | Mycota (9/0/0) | |
| ITS_01_50006167 | 73.7 | 111.7 | Mycota (1/0/2) |