Table 5. SNP candidates from uniquely mapped reads.
| (a) Higher frequency in AC morph | |||||||
|---|---|---|---|---|---|---|---|
| Contig | Annotation | Pos | Ref | Var | Freq-SB | Freq-AC | Effect |
| SS2U026955 | Keratin type II cytoskeletal 3 | 300 | A | T | 0.000 | 0.984 | synonymous |
| SS2U026955 | Keratin type II cytoskeletal 3 | 309 | G | A | 0.000 | 0.996 | synonymous |
| SS2U033960 | Cysteine sulfinic acid decarboxylase | 192 | C | G | 0.000 | 1.000 | 5prime |
| SS2U033960 | Cysteine sulfinic acid decarboxylase | 416 | G | T | 0.000 | 0.961 | G to V |
| SS2U033960 | Cysteine sulfinic acid decarboxylase | 945 | C | A | 0.004 | 0.956 | synonymous |
| SS2U043396 | Eukaryotic translation initiation factor 2-alpha
kinase 1 |
134 | A | G | 0.000 | 1.000 | 5prime |
| SS2U043886 | Transcription cofactor HES-6 | 1308 | T | C | 0.000 | 1.000 | 5prime |
| SS2U044339 | Intraflagellar transport protein 52 homolog | 479 | T | C | 0.021 | 1.000 | D to G |
| SS2U045168 | Putative Peptide prediction | 1275 | G | A | 0.000 | 1.000 | 3prime |
| SS2U045328 | E3 ubiquitin-protein ligase DTX3L | 388 | G | A | 0.000 | 0.977 | synonymous |
| SS2U045990 | Low-density lipoprotein receptor-related protein 1 | 135 | T | C | 0.000 | 0.969 | synonymous |
| SS2U048125 a | Transmembrane protein 131-like | 480 | G | A | 0.000 | 1.000 | synonymous |
| SS2U052747 | Uridine 5’-monophosphate synthase | 914 | G | A | 0.000 | 0.951 | synonymous |
| SS2U054542 | Mediator of RNA polymerase II transcription
subunit 20 |
474 | C | T | 0.027 | 0.995 | synonymous |
| SS2U056193 | SUMO-conjugating enzyme UBC9 | 96 | A | T | 0.000 | 1.000 | 3prime |
| SS2U057101 | ETS domain-containing protein Elk-3 | 440 | C | G | 0.000 | 1.000 | 3prime |
| SS2U058860 | Voltage-dependent anion-selective channel
protein 2 |
681 | G | T | 0.000 | 1.000 | 3prime |
| (b) Higher frequency in SB morph | |||||||
| Contig | Annotation | Pos | Ref | Var | Freq-SB | Freq-AC | Effect |
| SS2U000399 | Insulin-like growth factor-binding protein 7 | 598 | C | A | 1.000 | 0.000 | 3prime |
| SS2U004484 | Titin | 387 | G | A | 0.990 | 0.010 | synonymous |
| SS2U026826 | L-asparaginase | 363 | C | T | 1.000 | 0.000 | H to Y |
| SS2U026955 | Keratin type II cytoskeletal 3 | 116 | C | A | 0.996 | 0.031 | T to N |
| SS2U026955 | Keratin type II cytoskeletal 3 | 264 | C | T | 0.970 | 0.008 | synonymous |
| SS2U026955 | Keratin type II cytoskeletal 3 | 317 | C | T | 1.000 | 0.002 | T to M |
| SS2U033960 | Cysteine sulfinic acid decarboxylase | 363 | C | T | 1.000 | 0.025 | 5prime |
| SS2U033960 | Cysteine sulfinic acid decarboxylase | 387 | C | T | 1.000 | 0.030 | synonymous |
| SS2U033960 | Cysteine sulfinic acid decarboxylase | 657 | T | C | 0.990 | 0.031 | synonymous |
| SS2U034322 | Cyclin-C | 1094 | A | G | 1.000 | 0.000 | 3prime |
| SS2U034431 | Dolichyl-diphosphooligosaccharide–protein
glycosyltransferase subunit 2 |
436 | G | A | 0.992 | 0.000 | G to S |
| SS2U036025 | Nuclear receptor coactivator 4 | 36 | G | A | 1.000 | 0.043 | 5prime |
| SS2U040590 | Glutamyl-tRNA(Gln) amidotransferase subunit A
homolog |
478 | G | A | 0.972 | 0.000 | synonymous |
| SS2U045606 | Superkiller viralicidic activity 2-like 2 | 500 | C | T | 1.000 | 0.000 | synonymous |
| SS2U047816 | Squalene synthase | 1139 | G | A | 1.000 | 0.029 | synonymous |
| SS2U048063 | Lysine-specific demethylase NO66 | 669 | C | T | 1.000 | 0.000 | synonymous |
| SS2U050394 | UPF0542 protein C5orf43 homolog | 596 | G | A | 1.000 | 0.000 | synonymous |
| SS2U050880 a | Transmembrane protein 131-like | 901 | C | T | 1.000 | 0.000 | A to V |
| SS2U052076 | Eukaryotic translation initiation factor 3 subunit A | 824 | C | T | 1.000 | 0.031 | synonymous |
| SS2U053417 | RNA polymerase-associated protein LEO1 | 454 | G | A | 1.000 | 0.049 | synonymous |
| SS2U054333 | Scaffold attachment factor B2 | 382 | G | A | 0.999 | 0.000 | V to M |
| SS2U054705 | Cell division protein kinase 4 | 122 | A | G | 0.971 | 0.000 | 3prime |
| SS2U054965 | DNA-directed RNA polymerase I subunit RPA12 | 106 | G | A | 1.000 | 0.000 | 5prime |
| SS2U054965 | DNA-directed RNA polymerase I subunit RPA12 | 411 | T | G | 1.000 | 0.000 | synonymous |
| SS2U055120 | Chromatin modification-related protein MEAF6 | 350 | A | C | 1.000 | 0.000 | H to P |
| SS2U055153 | Complexin-1 | 1191 | C | A | 1.000 | 0.031 | 3prime |
| SS2U057635 | Mitogen-activated protein kinase 14B | 1370 | A | T | 1.000 | 0.026 | 3prime |
| SS2U058169 | Transmembrane protein 50A | 1214 | C | G | 0.973 | 0.000 | 3prime |
| SS2U058802 | Signal recognition particle 54 kDa protein | 607 | T | A | 0.969 | 0.000 | C to S |
aThose genes are distinct paralogs