Supplemental Table S7. Predicted effect of SNP-candidates differing in frequency between charr morphs.

Effect on transcribed region	Uni_SB	Uni_AC	Rep_SB	Rep_AC
5´prime	32	19	35	24
Synonymous	232	179	176	113
Non-synonymous	112	72	81	72
3´prime	147	123	59	74

From RNA-reads that mapped to one (Uni) or more (Rep) S. salar ESTs.

The candidate SNPs frequencies differ more than 50% between SB and AC-charr, summarized by which morph with higher frequency of the derived allele.