Table 2. MicroRNA-associated functional pathways in p53/exo.
# | KEGG pathway | # of genes | # of microRNAs | P-value |
---|---|---|---|---|
1 | PI3K–Akt signaling pathway (hsa04151) | 203 | 27 | <1e-16 |
2 | Focal adhesion (hsa04510) | 124 | 25 | <1e-16 |
3 | Ubiquitin-mediated proteolysis (hsa04120) | 91 | 24 | <1e-16 |
4 | Pathways in cancer (hsa05200) | 192 | 24 | <1e-16 |
5 | MAPK signaling pathway (hsa04010) | 141 | 23 | <1e-16 |
6 | ErbB signaling pathway (hsa04012) | 59 | 22 | <1e-16 |
7 | TGF-beta signaling pathway (hsa04350) | 60 | 21 | <1e-16 |
8 | p53 signaling pathway (hsa04115) | 48 | 21 | <1e-16 |
9 | Wnt signaling pathway (hsa04310) | 97 | 20 | <1e-16 |
10 | Small cell lung cancer (hsa05222) | 49 | 20 | <1e-16 |
11 | Transcriptional misregulation in cancer (hsa05202) | 90 | 18 | <1e-16 |
12 | Chronic myeloid leukemia (hsa05220) | 43 | 17 | 5.52E-13 |
13 | Phosphatidylinositol signaling system (hsa04070) | 40 | 17 | 1.02E-09 |
14 | HTLV-I infection (hsa05166) | 121 | 17 | 1.48E-07 |
15 | Endocytosis (hsa04144) | 99 | 16 | 8.47E-09 |
16 | Melanoma (hsa05218) | 47 | 16 | 6.33E-13 |
17 | Regulation of actin cytoskeleton (hsa04810) | 100 | 13 | 7.73E-09 |
18 | Non-small-cell lung cancer (hsa05223) | 30 | 11 | 1.12E-08 |
19 | HIF-1 signaling pathway (hsa04066) | 52 | 10 | 0.002182597 |
20 | ECM–receptor interaction (hsa04512) | 28 | 7 | <1e-16 |
We collected the exosomes secreted from SK-LU-1 cells transfected with HA nanoparticles encapsulated with wt-p53 plasmid. miRNA expression was undertaken using Nanostring. Using microT-CDs target predicting data set along with mirPATH software, we characterized the top KEGG pathways predicted for interaction enrichments for miRNAs in p53/exo. Ln(P-value) is a natural logarithmic scale of the P-value obtained from a χ2 test comparing expected number of genes with interaction and the actual number composing the pathways (DIANA algorithm). The third column indicates the number of genes identified as targets of the differentially expressed miRNAs in the specific groups enlisted in the fourth column. Abbreviations: ECM, extracellular matrix; HIF-1, hypoxia-inducible factor-1; HTLV-1, human T-lymphotrophic virus-1
.