TABLE 1.
Sample details and status of the DnERV(Env1.1) provirus and related sequences in 55 xenarthran individuals
| Species (lineage) | Individual | Origin | Provirus insertion (PCR)b | Presence of provirus-related elements (mapping)e |
|---|---|---|---|---|
| Dasypus novemcinctus (U.S.) | T1674 | U.S. (MS) | −/− | |
| Dasypus novemcinctus (U.S.) | T1678 | U.S. (TX) | +/−c | |
| Dasypus novemcinctus (U.S.) | BM2 | U.S. (TX) | +/−c | |
| Dasypus novemcinctus (U.S.) | T1829 | U.S. (LA) | +/−c | |
| Dasypus novemcinctus (U.S.) | JLD128 | U.S. (GA) | +/+c | |
| Dasypus novemcinctus (U.S.) | Female 1 | U.S. (AR) | +/−c | |
| Dasypus novemcinctus (U.S.) | Female 2 | U.S. (AR) | +/−c | |
| Dasypus novemcinctus (U.S.) | BM1 | U.S. (TX) | NA | + |
| Dasypus novemcinctus (East) | JP1 | El Salvador (zoo) | NAd | + |
| Dasypus novemcinctus (East) | JP2 | El Salvador (zoo) | +/− | |
| Dasypus novemcinctus (East) | JP3 | El Salvador (zoo) | +/−c | |
| Dasypus novemcinctus (East) | JP4 | El Salvador (zoo) | +/−c | |
| Dasypus novemcinctus (East) | JP5 | El Salvador (zoo) | +/−c | |
| Dasypus novemcinctus (East) | JP6 | El Salvador (zoo) | +/−c | |
| Dasypus novemcinctus (East) | JP7 | El Salvador (zoo) | +/−c | |
| Dasypus novemcinctus (East) | JP8 | El Salvador (zoo) | +/− | |
| Dasypus novemcinctus (East) | LS1 | Mexico (Chiapas) | −/− | |
| Dasypus novemcinctus (East) | LS2 | Mexico (Chiapas) | −/− | |
| Dasypus novemcinctus (East) | LS3 | Mexico (Oaxaca) | +/− | |
| Dasypus novemcinctus (East) | LS4 | Mexico (Chiapas) | +/− | |
| Dasypus novemcinctus (East) | NP276 | Mexico (Oaxaca) | +/− | |
| Dasypus novemcinctus (East) | YUC1 | Mexico (Yucatan) | −/− | + |
| Dasypus novemcinctus (East) | YUC2 | Mexico (Yucatan) | +/− | |
| Dasypus novemcinctus (East) | YUC3 | Mexico (Yucatan) | −/− | |
| Dasypus novemcinctus (East) | T2631 | Belize | +/−c | + |
| Dasypus novemcinctus (West) | AJR1 | Mexico | −/− | |
| Dasypus novemcinctus (West) | AJR2 | Mexico | −/− | |
| Dasypus novemcinctus (West) | MC151 | Mexico (Hidalgo) | NA | + |
| Dasypus pilosus | MSB 49990 | Peru | NA | + |
| Dasypus pilosus | LSUMZ 21888 | Peru | NA | + |
| “Dasypus sabanicola”a | MSB1 | Bolivia (Beni) | +/− | |
| “Dasypus sabanicola”a | MSB2 | Bolivia (Beni) | +/− | + |
| “Dasypus sabanicola”a | MSB3 | Bolivia (La Paz) | −/− | |
| “Dasypus sabanicola”a | NP751 | Peru (Cuzco) | +/− | |
| “Dasypus sabanicola”a | T1921 | Venezuela (Miranda) | −/− | |
| “Dasypus sabanicola”a | AN1 | Bolivia | NA | + |
| “Dasypus sabanicola”a | AN2 | Bolivia | +/− | |
| Dasypus sabanicola | USNM 372834 | Venezuela | NAd | + |
| Dasypus novemcinctus FG | T4069 | French Guiana | +/− | |
| Dasypus novemcinctus FG | T4553 | French Guiana | +/− | |
| Dasypus novemcinctus FG | DNO169 | French Guiana | −/− | |
| Dasypus novemcinctus FG | T2863 | French Guiana | −/− | |
| Dasypus novemcinctus FG | T1863 | French Guiana | NA | + |
| Dasypus novemcinctus FG | AP207 | French Guiana | NAd | + |
| Dasypus septemcinctus | T3002 | Argentina | NA | + |
| Dasypus hybridus | T3002 | French Guiana | −/− | |
| Dasypus hybridus | ZVC M2010 | Uruguay | NA | + |
| Dasypus kappleri | T4339 | French Guiana | −/− | + |
| Dasypus kappleri | DKA37 | French Guiana | −/− | |
| Chaetophractus villosus | ChaeVil1 | France (zoo) | −/− | − |
| Zaedyus pichiy | T6055 | Argentina | −/− | − |
| Chlamyphorus truncatus | CT1 | Argentina | −/− | − |
| Cabassous unicinctus | T1641 | French Guiana | −/− | |
| Tolypeutes matacus | Tma TB1 | U.S. (zoo) | NA | − |
| Tolypeutes matacus | TolyMat1 | France (zoo) | −/− |
a
Uncertain taxonomy.
b
+/+, diploid provirus insertion; +/−, haploid provirus insertion; −/−, no provirus insertion. NA, not applicable.
c
Full-length dasy-env1.1 ORF detected at the orthologous locus.
d
Illumina reads mapped to the empty locus.
e
+, Illumina reads mapped to the DnERV(Env1.1) sequence; −, no Illumina reads mapped to the DnERV(Env1.1) sequence.