Table 2. List of sequences of primers and PNA probes used in real-time PCR.
Gene | Mutation | Direct-ion | Primer | PNA Probe | ||
---|---|---|---|---|---|---|
Primer Sequence (5' - 3') | Size (bp) | Probe Sequence (5' - 3') | Fluo-resce-nce | |||
GJB2 | p.V37I | F | GGGGTGTGAACAAACACTCCA | 161 | CCACAACGAGGATC | FAM |
R | ATCTCCCCACACCTCCTTTGC | |||||
c.235delC | F | ACGATCACTACTTCCCCATCTCC | 145 | CAGGGCCCATAGCCG | Cy5 | |
c.299delAT | R | CTCTTTATCTCCCCCTTGATGAAC | CATGTCTCCGGTA | HEX | ||
p.R143W | F | GGTGGACCTACACAAGCAGCA | 90 | GATGACCCGGAAGAA | Texas Red | |
R | TGGAGAAGCCGTCGTACATGA | |||||
SLC16A4 | p.T410M | F | TTTGGGATCAGCAACATCTTCTC | 154 | TCCCGCACGGCCGTC | FAM |
R | CCATTCCTCGACTTGTTCTCTGA | CCGCATGG | FAM | |||
p.L676Q | F | CAATCCATAGCCTTGTGCTTGAC | 151 | AGATCACTGCGGG | HEX | |
R | TTGCAATACTGGACAACCCACAT | |||||
p.H723R | F | AGCCTGGGCAATAGAATGAGACT | 229 | GGTCCATGATGCTA | Texas Red | |
R | AAATGGAACCTTGACCCTCTTGA | |||||
c.IVS7-2A>G | F | CACAAAATCCCAGTCCCTATTCC | 221 | TTTTATTTCAGACGATAA | Cy5 | |
R | CCCTTGGGATGGATTTAACAATG | |||||
MTRNR1 | 1555A>G | F | GGTCGAAGGTGGATTTAGCAG | 202 | ACGACTTGTCTCCTCTA | HEX |
R | GCTACACTCTGGTTCGTCCAA | |||||
TMPRSS3 | p.A306T | F | ATTTCAGCTTGTACCTCCCCAAG | 189 | ATGACATCGCCCTTATG | Cy5 |
R | ACCCAGATGTACCATTGAACGTG | |||||
CDH23 | p.P240L | F | ACTTGGCCATCATCATCACAGAT | 162 | AACCTGCCTTACAGC | Texas Red |
R | CCCTAACAGGAGCTCAGAAGGAA |
F: forward direction, R: reverse direction