Table 2.
Datasets used and created by participating teams
| Teams | Tasks | Datasets | URL |
|---|---|---|---|
| Matos et al. (T2) | NER (Gene/protein) + normalization | BioCreative II Gene Mention Recognition corpus | http://www.biocreative.org/resources/corpora |
| NER (Species/organism) + normalization | LINNAEUS | http://linnaeus.sourceforge.net/ | |
| Batista-Navarro et al. (T3) | NER (Gene/protein) + normalization | CHEMDNER GPRO | http://www.biocreative.org/resources/corpora/chemdner-patents-gpro-corpus/ |
| NER (Species/organism) + normalization | S800 | http://journals.plos.org/plosone/article?id=10.1371/journal.pone.006539 | |
| Singh et al. (T4) | NER (Gene/protein) + normalization | BioCreative II Gene Mention Recognition corpus | http://www.biocreative.org/resources/corpora |
| NER (Species/organism) + normalization | S800 | http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0065390 | |
| NER (Gene/protein/species) evaluation | IGN corpus | https://sites.google.com/site/hongjiedai/projects/the-ign-corpus | |
| Peng et al. (T6) | PPI passages | 20 in-house full text documents | http://proteininformationresource.org/iprolink/corpora |
| AIMed corpus | ftp://ftp.cs.utexas.edu/pub/mooney/bio-data | ||
| Aydin et al. (T7) | PPI experimental method passages | In-house developed corpus | |
| Kim and Wilbur (T8) | PPI passages | BioCreative PPI corpus | http://www.biocreative.org/resources/corpora |
| Two in-house developed corpora | |||
| Islamaj Dogan et al. (T8) | GI passages | Two in-house developed corpora | http://bioc.sourceforge.net |