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. 2016 Aug 31;17(Suppl 5):498. doi: 10.1186/s12864-016-2827-7

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© The Author(s) 2016

Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 2 — MAF and H _o distributions. Statistics on filtered SNPs obtained running the four discovery pipelines compared in this study on the K family GBS data. a Distribution of observed heterozygosity b MAF distribution in SNPs useful to build a genetic map (categories 2 and 3, see Methods for details), c MAF Distribution on highly heterozygous SNPs (category 4), and d Percentage of filtered SNPs useful to build a genetic map that appear at the filtered (upper chart), and unfiltered (lower chart) datasets obtained running each method