Table 1. JunctionSeq results.
Adjusted P-value threshold | In vivo | In vitro | No stimulus (in vivo) | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Ctrl day/night | Sham day/night | Overlap, in vivo | CN versus NE | CN versus DBcAMP | Overlap, in vitro | Overlap, All four | SCGX Day/Night | DCN day/night | Overlap, no stimulus | |
0.01 | 447 | 320 | 168 | 144 | 195 | 90 | 42 | 38 | 9 | 2 |
0.001 | 300 | 202 | 116 | 89 | 127 | 61 | 28 | 24 | 5 | 0 |
0.0001 | 227 | 151 | 94 | 67 | 91 | 48 | 18 | 20 | 2 | 0 |
0.00001 | 182 | 119 | 79 | 51 | 74 | 38 | 15 | 14 | 2 | 0 |
0.000001 | 151 | 98 | 61 | 43 | 65 | 34 | 14 | 11 | 2 | 0 |
The numbers of genes found to exhibit significant differential exon or splice junction usage for the four rat pineal gland analyses at various P-value thresholds.