Table 2. Amino acids encoded by codons eight to five 5′ of the frameshift site in diverse antizyme mRNAs. The antizyme 3 frameshift region is very different from all others in that it appears to lack all known stimulatory signals, and in heterologous mammalian cells gives a very low level of frameshifting. The identifiable signals in Zebra fish, D. rerio, retina and brain specific antizyme mRNA are intermediate in potential strength. For those mRNAs with a pseudoknot frameshifting stimulator 3 nts 3′ of the shift site, the pseudoknot is expected to be at the unwinding site and at the outer edge of the mRNA entrance channel when codons −2 to −4 are at the ribosomal P-site. For Cardiovirus -1 framshifting see Figure 3B).
−8 | −7 | −6 | −5 | |||
---|---|---|---|---|---|---|
Saccharomyces cerevisiae | G | G | F | |||
Schizosaccharomyces pombe | P | A | G | G | A | |
Coprinopsis cinerea (Mushroom) | S | G | G | P | ||
Caenorhabditis elegans | P | G | D | V | G | |
Drosophila melanogaster | G | V | G | P | ||
Danio rerio – long form (fish) | P | C | P | G | P | |
Danio rerio – short form | G | P | G | P | ||
Danio rerio – brain & retina | A | P | G | P | ||
Xenopus laevis (frog) | G | P | G | P | ||
Gallus gallus (bird) | G | P | G | P | ||
Mus musculus antizyme 1 | G | P | G | P | ||
Homo sapiens antizyme 1 | G | P | G | P | ||
Mus musculus antizyme 2 | V | P | G | P | ||
Homo sapiens antizyme 2 | V | P | G | P | ||
Mus musculus antizyme 3 | P | C | S | C | ||
Homo sapiens antizyme 3 | P | R | S | C | ||
Saffold cardiovirus | ||||||
−1 frameshifting | T | N | P | G | P |