Table 2.
The layouts supported in the visualization interface. The six layouts supported in the visualization interface of InteGO2
| Name | Description |
|---|---|
| concentric | The concentric layout positions nodes in concentric circles. |
| Users could select this layout to put the graph in the middle | |
| of the explorer. | |
| breadth-first | The breadth-first layout puts nodes in a hierarchy, based |
| on a breadth-first traversal of the graph. The hierarchical | |
| structure of the gene functional association network is | |
| shown in this layout. | |
| circle | The circle layout puts nodes in a circle. From a circle layout, |
| the user could easily find the nodes with high degree and | |
| low degree. | |
| cose | The cose (Compound Spring Embedder) layout uses a |
| force-directed simulation to lay out compound graphs. | |
| This layout helps the users to find the density region of the | |
| network. | |
| cola | The cola layout uses a force-directed physics simulation |
| with several sophisticated constraints. | |
| grid | The grid layout puts nodes in a well-spaced grid. |