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. Author manuscript; available in PMC: 2016 Dec 20.
Published in final edited form as: Curr Protoc Bioinformatics. 2016 Jun 20;54:12.13.1–12.13.25. doi: 10.1002/cpbi.4

Figure 5. MicA alignment following manual refinement.

Figure 5

Manual refinement using RALEE restores full conservation to the first stem-loop and removes an unlikely insertion within the hairpin structure. Additionally careful manipulation of the sequence between the two hairpin reveals strong conservation of a short A/U-rich sequence motif that was previously obscure.