Table 2.
Result of GoldenGate assay of designed SNP probes and genetic mapping
| Predicted zygosity for FJ/GD | # of designed SNP probes | # of genotyped SNPs | Observed zygosity for FJ/GD | # of mapped SNPs | # of mapped SNPs on the predicted loci | # of SNPs used for haplotype definition | |||
|---|---|---|---|---|---|---|---|---|---|
|
| |||||||||
| het/hom | het/het | hom/het | hom/hom | ||||||
| het/hom | 1152 | 988 | 830 | 148 | 3 | 7 | 980 | 765 | 938 |
| hom/het | 96 | 90 | 0 | 0 | 78 | 12 | 77 | 73 | 76 |
FJ/GD = het/hom means that the genotype of each SNP is heterozygous in ‘Fuji’, and homozygous in ‘Golden Delicious’. The same applies to FJ/GD = hom/het, het/het and hom/hom.