Table 3.
Cephalochordate genes associated with most CNEs based on the CNEs-union set
| B. floridae gene ID | CNE count | Gene product description |
|---|---|---|
| 89423 | 190 | Bruno 4/6 |
| 56669 | 173 | Paired box protein Pax-2 |
| 84482 | 171 | Transcription intermediary factor 1-alpha (TIF1-alpha) |
| 96723 | 145 | Unknown |
| 201173 | 137 | Protein CBFA2T1-like |
| 89425 | 126 | UPF0676 protein C1494.01-like |
| 68413 | 125 | Fibrinogen C domain-containing protein 1-like |
| 281312 | 121 | Receptor-type tyrosine-protein phosphatase delta-like |
| 208446 | 119 | Neurexin-1-beta-like |
| 84479 | 119 | Disks large homolog 5-like |
Note.—The highlighted genes are shown as top 10 genes associated with most CNEs based on all of our four CNE sets. The gene descriptions were retrieved based on BLASTP against NCBI nr database.