Table 1.
Data Set | Taxon Name | No. of Strains | No. of Concatenates | Mean GC % | Median ENC |
---|---|---|---|---|---|
Clostridium | Clostridium botulinum | 8 | 11 | 29.6 | 35.3 |
Campylo | Campylobacter jejunii | 6 | 7 | 31.6 | 39.8 |
Francis | Francisella tularensis | 8 | 7 | 33.8 | 41.6 |
Staph | Staphylococcus aureus | 15 | 11 | 34.2 | 40.5 |
Sulfoa | Sulfolobus spp. | 8 | 9 | 35.4 | 45.0 |
B_anthracis | Bacillus antharcis/aureus group | 17 | 6 | 37.0 | 42.5 |
Listeria | Listeria spp. | 8 | 6 | 38.8 | 47.6 |
Strep_pyo | Streptococcus pyogenes | 12 | 7 | 39.6 | 48.5 |
Helico | Helicobacter pylori | 14 | 2 | 40.4 | 46.6 |
Acineto | Acinetobacter spp. | 6 | 10 | 40.8 | 43.7 |
Clamy_trach | Clamydia trachomatis | 13 | 7 | 41.8 | 50.7 |
Strep_pneu | Streptococcus pneumoniae | 13 | 7 | 42.0 | 48.8 |
Yersinia | Yersinia pestis | 11 | 13 | 49.3 | 51.8 |
Escherichia | Escherichia coli | 35 | 3 | 53.3 | 45.5 |
Salmo | Salmonella enterica | 14 | 12 | 54.6 | 45.3 |
Neisseiria | Neisseiria meningitidis | 8 | 4 | 55.3 | 43.8 |
Brucella | Brucella spp. | 9 | 8 | 58.8 | 41.6 |
Bifido_longum | Bifidobacterium longum | 6 | 7 | 61.9 | 38.2 |
Mycobacterium | Mycobacterium tuberculosis complex | 7 | 1 | 66.1 | 41.5 |
Burk_ceno | Burkholderia cenocepacia complex | 8 | 16 | 68.2 | 31.0 |
Burk_mal | Burkholderia mallei group | 9 | 12 | 68.7 | 31.0 |
Note.—Data comes from Lassalle et al. (2015). On each line is indicated the species and the corresponding number of strains in the alignments, the number of concatenates, the mean observed GC content and the median observed ENC, each concatenate being approximately 50 genes long. Genes are from the core genome, at least 900 nt long and classified as nonrecombinant in Lassalle et al. (2015).
aArcheal species of the data set.