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. 2016 Jul 10;8(8):2427–2441. doi: 10.1093/gbe/evw165

Table 1.

Summary of the Data Set Characteristics

Data Set Taxon Name No. of Strains No. of Concatenates Mean GC % Median ENC
Clostridium Clostridium botulinum 8 11 29.6 35.3
Campylo Campylobacter jejunii 6 7 31.6 39.8
Francis Francisella tularensis 8 7 33.8 41.6
Staph Staphylococcus aureus 15 11 34.2 40.5
Sulfoa Sulfolobus spp. 8 9 35.4 45.0
B_anthracis Bacillus antharcis/aureus group 17 6 37.0 42.5
Listeria Listeria spp. 8 6 38.8 47.6
Strep_pyo Streptococcus pyogenes 12 7 39.6 48.5
Helico Helicobacter pylori 14 2 40.4 46.6
Acineto Acinetobacter spp. 6 10 40.8 43.7
Clamy_trach Clamydia trachomatis 13 7 41.8 50.7
Strep_pneu Streptococcus pneumoniae 13 7 42.0 48.8
Yersinia Yersinia pestis 11 13 49.3 51.8
Escherichia Escherichia coli 35 3 53.3 45.5
Salmo Salmonella enterica 14 12 54.6 45.3
Neisseiria Neisseiria meningitidis 8 4 55.3 43.8
Brucella Brucella spp. 9 8 58.8 41.6
Bifido_longum Bifidobacterium longum 6 7 61.9 38.2
Mycobacterium Mycobacterium tuberculosis complex 7 1 66.1 41.5
Burk_ceno Burkholderia cenocepacia complex 8 16 68.2 31.0
Burk_mal Burkholderia mallei group 9 12 68.7 31.0

Note.—Data comes from Lassalle et al. (2015). On each line is indicated the species and the corresponding number of strains in the alignments, the number of concatenates, the mean observed GC content and the median observed ENC, each concatenate being approximately 50 genes long. Genes are from the core genome, at least 900 nt long and classified as nonrecombinant in Lassalle et al. (2015).

aArcheal species of the data set.