Table 1. Sequence coverage (%) and number of peptides (spectral count) for each polypeptide identified in MudPIT analysis of affinity purifications using U2B, SF3B5, Spt3 and Spt20 as bait proteins.
X, protein not identified.
| Bait: % (spectral count)
|
|||||||
|---|---|---|---|---|---|---|---|
| FBgn ID | CG number | Protein | U2B | SF3B5 | Spt3 | Spt20 | Length (aa) |
| FBgn0050390 | CG30390 | Sgf29 | X | 25.95%(10) | 59.52%(74) | 57.44%(97) | 289 |
| FBgn0030891 | CG7098 | Ada3 | X | 10.97%(13) | 34.53%(59) | 32.91%(101) | 556 |
| FBgn0020388 | CG4107 | Gcn5 | X | 17.34%(31) | 39.98%(162) | 51.91%(253) | 813 |
| FBgn0037555 | CG9638 | Ada2b-PB | X | 16.94%(27) | 42.88%(91) | 44.14%(174) | 555 |
| FBgn0051866 | CG31866 | Ada1 | X | 12.66%(8) | 39.94%(60) | 40.26%(73) | 308 |
| FBgn0031281 | CG3883 | SAF6 | X | 17.85%(45) | 33.33%(123) | 42.4%(153) | 717 |
| FBgn0036374 | CG17689 | Spt20 | X | 8.6%(25) | 25.2%(385) | 36.04%(1423) | 1873 |
| FBgn0037981 | CG3169 | Spt3 | X | 15.1%(17) | 42.19%(693) | 26.56%(149) | 384 |
| FBgn0030874 | CG6506 | Spt7 | X | 24.23%(32) | 33.43%(210) | 36.77%(186) | 359 |
| FBgn0026324 | CG3069 | TAF10b | X | 23.29%(4) | 23.29%(16) | 18.49%(5) | 146 |
| FBgn0011290 | CG17358 | TAF12 | X | 5.63%(1) | 36.25%(18) | 36.25%(25) | 160 |
| FBgn0000617 | CG6474 | TAF9 | 3.96%(1) | 32.73%(18) | 33.09%(72) | 36.69%(74) | 278 |
| FBgn0053554 | CG33554 | Tra1 (Nipped-A) | X | 16.15%(117) | 28.02%(344) | 45.33%(1364) | 3790 |
| FBgn0039067 | CG4448 | WDA | X | 24.5%(43) | 47.51%(240) | 48.86%(373) | 743 |
| FBgn0031420 | CG9866 | ATXN7 | X | 2.47%(5) | 18.02%(46) | 33.88%(108) | 971 |
| FBgn0000618 | CG15191 | E(y)2 | X | 34.65%(13) | 42.57%(25) | 51.49%(26) | 101 |
| FBgn0013717 | CG4166 | Nonstop | X | 4.84%(7) | 23.76%(64) | 28.59%(148) | 703 |
| FBgn0036804 | CG13379 | Sgf11 | X | 8.67%(4) | 44.9%(73) | 44.9%(139) | 196 |
| FBgn0040534 | CG11985 | SF3B5 | 83.53%(46) | 67.06%(89) | 67.06%(33) | 83.53%(32) | 85 |
| FBgn0035162 | CG13900 | SF3B3 | 54.12%(629) | 58.92%(2997) | 51.83%(639) | 51.02%(715) | 1227 |
| FBgn0031493 | CG3605 | SF3B2 (SF3b145) SF3B4 | 37.12%(146) | 47.4%(123) | X | X | 749 |
| FBgn0015818 | CG3780 | (SF3b149/Spx) | 28.24%(353) | 23.63%(410) | X | X | 347 |
| FBgn0035692 | CG13298 | SF3B6 (SF3b14a) | 49.59%(92) | 55.37%(201) | X | X | 121 |
| FBgn0031822 | CG9548 | PHF5A (SF3b14b) | 33.33%(8) | 7.21%(1) | X | X | 111 |
| FBgn0031266 | CG2807 | SF3B1 (SF3b155) | 52.76%(557) | 54.93%(1200) | X | X | 1340 |
| FBgn0266917 | CG16941 | SF3A1 (SF3a120) | 52.42%(313) | 49.74%(340) | X | X | 784 |
| FBgn0014366 | CG2925 | SF3A3 (SF3a60/noi) | 54.27%(337) | 56.26%(281) | X | X | 503 |
| FBgn0036314 | CG10754 | SF3A2 (SF3a66) | 46.21%(120) | 34.47%(222) | X | X | 264 |
| FBgn0262601 | CG5352 | SmB | 49.25%(354) | 29.65%(37) | 7.04%(2) | 10.55%(1) | 199 |
| FBgn0261933 | CG10753 | SmD1 (snRNP69D) | 52.42%(576) | 35.48%(56) | 16.13%(5) | 16.13%(2) | 124 |
| FBgn0261789 | CG1249 | SmD2 | 56.3%(323) | 47.9%(39) | X | X | 119 |
| FBgn0023167 | CG8427 | SmD3 | 35.76%(773) | 6.62%(7) | X | X | 151 |
| FBgn0261790 | CG18591 | SmE | 71.28%(524) | 67.02%(51) | 15.96%(1) | X | 94 |
| FBgn0000426 | CG16792 | SmF (DebB) | 48.86%(45) | 39.77%(13) | X | X | 88 |
| FBgn0261791 | CG9742 | SmG | 57.89%(196) | 28.95%(9) | X | X | 76 |
| FBgn0033210 | CG1406 | U2A | 61.89%(320) | 57.74%(114) | 23.02%(5) | X | 265 |
| FBgn0003449 | CG4528 | U2B (snf) | 43.06%(2520) | 29.17%(87) | X | X | 216 |