Table 2.
Allele and genotype data for PHS010 for the ascites experimental lines1
| SUS | RES | REL | REL male | REL female | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Item | Size (bp) | All freq | All freq | All freq | R freq | S freq | Adj Pval | R freq | S freq | Adj Pval | R freq | S freq | Adj Pval |
| Allele | |||||||||||||
| A | 161 | 0.72 | 0.00 | 0.43 | 0.40 | 0.46 | 1.000 | 0.46 | 0.46 | 1.000 | 0.37 | 0.45 | 0.783 |
| B | 151 | 0.28 | 0.78 | 0.51 | 0.52 | 0.50 | 1.000 | 0.50 | 0.48 | 1.000 | 0.55 | 0.52 | 1.000 |
| C | 171 | 0.00 | 0.21 | 0.06 | 0.07 | 0.04 | 0.549 | 0.04 | 0.06 | 1.000 | 0.08 | 0.02 | 0.206 |
| Count | 504 | 556 | 550 | 284 | 214 | 102 | 126 | 120 | 88 | ||||
| Genotype | |||||||||||||
| AA | 0.51 | 0.00 | 0.19 | 0.17 | 0.21 | 1.000 | 0.21 | 0.22 | 1.000 | 0.12 | 0.20 | 0.810 | |
| BB | 0.06 | 0.59 | 0.24 | 0.23 | 0.24 | 1.000 | 0.24 | 0.22 | 1.000 | 0.22 | 0.27 | 1.000 | |
| CC | 0.00 | 0.01 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | ||||
| AB | 0.43 | 0.00 | 0.46 | 0.46 | 0.46 | 1.000 | 0.43 | 0.44 | 1.000 | 0.50 | 0.48 | 1.000 | |
| AC | 0.00 | 0.00 | 0.02 | 0.01 | 0.03 | 0.02 | 0.03 | 0.00 | 0.02 | ||||
| BC | 0.00 | 0.40 | 0.09 | 0.13 | 0.06 | 0.003 | 0.10 | 0.08 | 0.389 | 0.17 | 0.02 | 0.001 | |
| Count | 252 | 278 | 275 | 142 | 107 | 82 | 63 | 60 | 44 | ||||
1The ascites susceptible (SUS), former pedigree elite broiler (REL), and ascites resistant (RES) lines were genotyped for PHS010. Allele and genotype frequencies (freq) were determined for the entire line (all) or for the ascites resistant (R) or susceptible (S) subpopulations based on a hypobaric challenge. The total number of alleles or genotypes is indicated below the frequencies (count). The REL samples were also analyzed according to sex. The P-values for a simple Bonnferoni correction (see Materials and Methods) of chi-squared test of observed vs. expected (Adj Pval) are presented for those alleles or genotypes where the frequency was greater than or equal to 0.10.