Table 5.
Allele and genotype data for PHS010 for the commercial lines1
| Line Y | Line Y male | Line Y female | Line Z | Line Z male | Line Z female | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Item | Size (bp) | All freq | R freq | S freq | Adj Pval | R freq | S freq | Adj Pval | R freq | S freq | Adj Pval | All freq | R freq | S freq | Adj Pval | R freq | S freq | Adj Pval | R freq | S freq | Adj Pval |
| Allele | |||||||||||||||||||||
| A | 161 | 0.51 | 0.49 | 0.55 | 1.000 | 0.48 | 0.57 | 1.000 | 0.51 | 0.53 | 1.000 | 0.65 | 0.63 | 0.69 | 0.963 | 0.62 | 0.59 | 0.915 | 0.68 | 0.76 | 0.514 |
| B | 151 | 0.27 | 0.32 | 0.18 | 0.025 | 0.32 | 0.14 | 0.062 | 0.33 | 0.22 | 0.430 | 0.32 | 0.34 | 0.29 | 0.852 | 0.36 | 0.39 | 0.520 | 0.29 | 0.23 | 0.252 |
| D | 159 | 0.21 | 0.18 | 0.27 | 0.195 | 0.20 | 0.28 | 0.646 | 0.15 | 0.26 | 0.371 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | |||
| E | 157 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.00 | 0.02 | 0.03 | 0.02 | 0.02 | 0.02 | 0.03 | 0.01 | ||||||
| Count | 376 | 226 | 150 | 120 | 76 | 104 | 74 | 382 | 252 | 130 | 134 | 56 | 90 | 70 | |||||||
| Genotype | |||||||||||||||||||||
| AA | 0.24 | 0.20 | 0.31 | 0.900 | 0.20 | 0.34 | 0.827 | 0.21 | 0.27 | 1.000 | 0.43 | 0.44 | 0.42 | 1.000 | 0.40 | 0.25 | 0.427 | 0.51 | 0.51 | 0.688 | |
| BB | 0.07 | 0.11 | 0.03 | 0.262 | 0.11 | 0.00 | 0.184 | 0.10 | 0.05 | 1.000 | 0.12 | 0.16 | 0.03 | 0.027 | 0.17 | 0.07 | 0.237 | 0.16 | 0.00 | 0.087 | |
| DD | 0.05 | 0.02 | 0.09 | 0.100 | 0.02 | 0.08 | 0.02 | 0.11 | 0.272 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | |||||
| EE | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | |||||||
| AB | 0.29 | 0.34 | 0.23 | 0.804 | 0.30 | 0.18 | 1.000 | 0.38 | 0.27 | 0.741 | 0.41 | 0.35 | 0.52 | 0.226 | 0.38 | 0.64 | 0.188 | 0.27 | 0.46 | 0.301 | |
| AD | 0.23 | 0.22 | 0.25 | 1.000 | 0.25 | 0.26 | 1.000 | 0.19 | 0.24 | 1.000 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | ||||
| AE | 0.01 | 0.02 | 0.00 | 0.02 | 0.00 | 0.02 | 0.00 | 0.04 | 0.04 | 0.03 | 0.03 | 0.04 | 0.07 | 0.03 | |||||||
| BD | 0.09 | 0.10 | 0.08 | 1.000 | 0.11 | 0.11 | 1.000 | 0.08 | 0.05 | 1.000 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | ||||
| BE | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.01 | 0.02 | 0.00 | 0.03 | 0.00 | 0.00 | 0.00 | |||||||
| DE | 0.01 | 0.00 | 0.01 | 0.00 | 0.03 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | |||||||
| Count | 188 | 113 | 75 | 61 | 38 | 52 | 37 | 191 | 126 | 65 | 78 | 28 | 45 | 35 | |||||||
| Line W | Line W male | Line W female | |||||||||||||||||||
| All freq | R freq | S freq | Adj Pval | R freq | S freq | Adj Pval | R freq | S freq | Adj Pval | ||||||||||||
| Allele | |||||||||||||||||||||
| A | 0.52 | 0.52 | 0.52 | 1.000 | 0.60 | 0.59 | 0.366 | 0.52 | 0.46 | 1.000 | |||||||||||
| B | 0.02 | 0.02 | 0.02 | 0.01 | 0.01 | 0.02 | 0.03 | ||||||||||||||
| D | 0.30 | 0.26 | 0.34 | 0.373 | 0.24 | 0.30 | 0.504 | 0.24 | 0.38 | 0.220 | |||||||||||
| E | 0.16 | 0.21 | 0.12 | 0.102 | 0.15 | 0.09 | 0.415 | 0.22 | 0.13 | 0.446 | |||||||||||
| Count | 380 | 194 | 186 | 136 | 74 | 88 | 112 | ||||||||||||||
| Genotype | |||||||||||||||||||||
| AA | 0.26 | 0.27 | 0.25 | 1.000 | 0.28 | 0.32 | 1.000 | 0.25 | 0.20 | 1.000 | |||||||||||
| BB | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | ||||||||||||||
| DD | 0.06 | 0.04 | 0.09 | 0.541 | 0.06 | 0.08 | 1.000 | 0.02 | 0.09 | 0.821 | |||||||||||
| EE | 0.04 | 0.04 | 0.03 | 0.02 | 0.00 | 0.07 | 0.05 | 0.218 | |||||||||||||
| AB | 0.03 | 0.03 | 0.02 | 0.02 | 0.03 | 0.05 | 0.02 | ||||||||||||||
| AD | 0.35 | 0.29 | 0.42 | 0.278 | 0.26 | 0.38 | 1.000 | 0.32 | 0.45 | 0.414 | |||||||||||
| AE | 0.14 | 0.19 | 0.10 | 0.407 | 0.19 | 0.14 | 1.000 | 0.18 | 0.07 | 0.441 | |||||||||||
| BD | 0.01 | 0.00 | 0.02 | 0.00 | 0.00 | 0.00 | 0.04 | ||||||||||||||
| BE | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | ||||||||||||||
| DE | 0.11 | 0.14 | 0.08 | 0.527 | 0.17 | 0.05 | 0.302 | 0.11 | 0.09 | 1.000 | |||||||||||
| Count | 190 | 97 | 93 | 53 | 37 | 44 | 56 | ||||||||||||||
1Line designations are as described in the text. Allele and genotype frequencies (freq) were determined for the entire line (all) or for the ascites resistant (R) or susceptible (S) subpopulations based on a hypobaric challenge. The total number of alleles or genotypes is indicated below the frequencies (count). The samples for each line were also analyzed according to sex. The P-values for a simple Bonnferoni correction (see Materials and Methods) of chi-squared test of observed vs. expected (Adj Pval) are presented for those alleles or genotypes where the frequency was greater than or equal to 0.10.