Table 10.

Induced ESR gene set: comparison between NEAT and LA+S (GO Slim sets)

		μ 0		log10 (p-value)
	GO Slim BP set	NEAT	LA+S	NEAT	LA+S
1	Response to oxidative stress	242.2	248.5	–202.7	–253.7
2	Carbohydrate metabolic process	671.2	663.9	–110.9	–123.3
3	Response to chemical stimulus	885.1	912.4	–83.4	–92.8
4	Oligosaccharide metabolic process	165.3	158.1	–77.3	–104.5
5	Cofactor metabolic process	219.0	225.6	–73.7	–76.2
6	Generation of precursor metabolites and energy	294.8	293.4	–54.0	–56.1
7	Nucleobase-containing small molecule metabolic process	404.5	417.4	–49.2	–41.0
8	Carbohydrate transport	65.8	77.7	–45.0	–52.8
9	Membrane invagination	120.6	118.3	–37.0	–51.7
10	Transmembrane transport	644.4	684.7	–24.2	–16.2
11	Protein folding	296.9	296.3	–22.7	–26.6
12	Lipid metabolic process	484.4	495.7	–19.9	–23.3
13	Endocytosis	245.5	248.7	–19.3	–19.3
14	Vacuole organization	200.2	199.7	–18.9	–22.4
15	Cellular respiration	118.4	125.2	–14.5	–14.1
16	Response to starvation	331.4	318.4	–11.2	–15.8
17	Protein targeting	478.8	485.1	–10.9	–15.8
18	Proteolysis involved in cellular protein catabolic process	488.5	494.1	–10.9	–9.8
19	Peroxisome organization	124.8	123.5	–6.0	–6.0
20	Lipid transport	79.7	90.4	–4.9	–2.8
21	Ion transport	380.2	410.7	–4.8	–2.1
22	Protein maturation	27.7	30.9	–3.9	–3.0
23	Cell morphogenesis	79.4	80.8	–3.6	–3.7
24	Sporulation	306.4	301.7	–2.1	–2.5
25	Amino acid transport	109.4	113.0	–2.1	–1.6
26	Response to osmotic stress	181.8	178.3	–1.6	–2.1
27	Protein phosphorylation	587.6	564.3	–1.4	–2.7

The table reports the gene sets that are found to be over-enriched (α=1 %) by at least one of the two methods. μ ₀ denotes the expected value of N _AB in the absence of enrichment. The last two columns report log ₁₀ p-values for the proposed NEAT and the LA+S test of [19], respectively