Table 4.
Gene ontology (GO) term enrichment for the abundant proteins of the proteomes of rhizobial strains
| Strain GO ID | GO term | Annotated orthologous groups (OGs) | Annotated OGs in this list | Expected annotated OGs by random | P-value |
|---|---|---|---|---|---|
| CCGM1 | Biological processes | ||||
| GO:0046395 | Carboxylic acid catabolic process | 425 | 12 | 0.4 | 3.60E-15 |
| GO:0009063 | Cellular amino acid catabolic process | 221 | 10 | 0.21 | 8.50E-15 |
| GO:0046365 | Monosaccharide catabolic process | 189 | 9 | 0.18 | 1.30E-13 |
| GO:0051188 | Cofactor biosynthetic process | 624 | 12 | 0.59 | 3.30E-13 |
| GO:0006732 | Coenzyme metabolic process | 710 | 12 | 0.67 | 1.50E-12 |
| Molecular function | |||||
| GO:0048037 | Cofactor binding | 993 | 12 | 0.88 | 3.50E-11 |
| GO:0051287 | NAD binding | 69 | 5 | 0.06 | 4.40E-09 |
| GO:0050662 | Coenzyme binding | 665 | 9 | 0.59 | 5.30E-09 |
| GO:0016740 | Transferase activity | 7189 | 21 | 6.35 | 8.20E-08 |
| GO:0016491 | Oxidoreductase activity | 3415 | 15 | 3.01 | 8.60E-08 |
| CIAT652 | Biological processes | ||||
| GO:0005996 | Monosaccharide metabolic process | 404 | 9 | 0.31 | 1.70E-11 |
| GO:0046394 | Carboxylic acid biosynthetic process | 1074 | 11 | 0.83 | 2.70E-10 |
| GO:0006790 | Sulfur compound metabolic process | 583 | 9 | 0.45 | 4.30E-10 |
| GO:0044275 | Cellular carbohydrate catabolic process | 156 | 6 | 0.12 | 2.20E-09 |
| GO:0009117 | Nucleotide metabolic process | 1446 | 11 | 1.12 | 5.90E-09 |
| Molecular function | |||||
| GO:0016787 | Hydrolase activity | 7866 | 21 | 5.7 | 3.00E-09 |
| GO:0016462 | Pyrophosphatase activity | 1346 | 9 | 0.97 | 3.30E-07 |
| GO:0042626 | ATPase activity, coupled to transmembrane movement of substances | 392 | 6 | 0.28 | 3.50E-07 |
| GO:0016835 | Carbon-oxygen lyase activity | 411 | 6 | 0.3 | 4.60E-07 |
| GO:0004022 | Alcohol dehydrogenase (NAD) activity | 23 | 3 | 0.02 | 6.10E-07 |
| GO:0004812 | Aminoacyl-tRNA ligase activity | 106 | 4 | 0.08 | 1.10E-06 |
| CCGM7 | Biological processes | ||||
| GO:0046483 | Heterocycle metabolic process | 2459 | 17 | 1.72 | 3.50E-14 |
| GO:0009117 | Nucleotide metabolic process | 1446 | 12 | 1.01 | 9.40E-11 |
| GO:0015980 | Energy derivation by oxidation of organic compounds | 652 | 9 | 0.46 | 4.30E-10 |
| GO:0010035 | Response to inorganic substance | 944 | 10 | 0.66 | 4.90E-10 |
| GO:0006950 | Response to stress | 5245 | 18 | 3.67 | 5.80E-10 |
| GO:0046686 | Response to cadmium ion | 271 | 7 | 0.19 | 6.60E-10 |
| Molecular function | |||||
| GO:0008266 | Poly(U) RNA binding | 22 | 4 | 0.01 | 1.10E-09 |
| GO:0008187 | Poly-pyrimidine tract binding | 29 | 4 | 0.02 | 3.50E-09 |
| GO:0046872 | Metal ion binding | 5534 | 16 | 3.63 | 4.80E-08 |
| GO:0043169 | Cation binding | 5559 | 16 | 3.65 | 5.20E-08 |
| GO:0003727 | Single-stranded RNA binding | 67 | 4 | 0.04 | 1.10E-07 |
| GO:0017076 | Purine nucleotide binding | 1824 | 10 | 1.2 | 1.40E-07 |
| CFNEI73 | Biological processes | ||||
| GO:0044283 | Small molecule biosynthetic process | 1489 | 13 | 1.04 | 6.30E-12 |
| GO:0016054 | Organic acid catabolic process | 425 | 9 | 0.3 | 9.70E-12 |
| GO:0008652 | Cellular amino acid biosynthetic process | 491 | 9 | 0.34 | 3.50E-11 |
| GO:0009081 | Branched-chain amino acid metabolic process | 55 | 5 | 0.04 | 4.00E-10 |
| GO:0043648 | Dicarboxylic acid metabolic process | 148 | 6 | 0.1 | 8.30E-10 |
| Molecular function | |||||
| GO:0050662 | Coenzyme binding | 665 | 8 | 0.45 | 1.10E-08 |
| GO:0050660 | Flavin adenine dinucleotide binding | 153 | 5 | 0.1 | 6.20E-08 |
| GO:0016462 | Pyrophosphatase activity | 1346 | 9 | 0.91 | 1.80E-07 |
| GO:0048037 | Cofactor binding | 993 | 8 | 0.67 | 2.40E-07 |
| GO:0016817 | Hydrolase activity, acting on acid anhydrides | 1456 | 9 | 0.99 | 3.40E-07 |
| GO:0051287 | NAD binding | 69 | 3 | 0.05 | 1.40E-05 |
Only exclusive terms for each strain are shown