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. 2016 Aug 26;72(Pt 9):700–706. doi: 10.1107/S2053230X16012012

Table 5. Properties of known bacterial PDCs in order of decreasing thermostability.

  ZpPDC ApPDC ZmPDC GdPDC GoPDC SvPDC
Gram status Negative Negative Negative Negative Negative Positive
Amino-acid identity (%) Reference 73 63 71 67 31
Temperature optimum (°C) 65 65 60 45–50 53§ NA
Temperature dependence of activity retention 60°C, 100% 50°C, 100% 45°C, 85% NA (half-life at 60°C, 0.3 h) 55°C, 98% 45°C, 95%
65°C, 80% 60°C, 65% 60°C, 65% 60°C, 70% 50°C, 0%
70°C, 0% 65°C, 45% 65°C, 45%   65°C, 40%§  
  70°C, 5% 70°C, 0%      
Kinetics Michaelis–Menten Michaelis–Menten Michaelis–Menten Michaelis–Menten Michaelis–Menten Sigmoidal
V max (U mg−1) 165 ± 3 (pH 6.5) 110 ± 2 (pH 6.5) 121 (pH 6.5) 20 (pH 5) 57 (pH 5) 103
116 ± 2 (pH 6.5) 97 (pH 5) 100 (pH 6) 39 (pH 6) 47 (pH 6) 45 (pH 6.5)
130 (pH 6) 79 (pH 7) 78 (pH 7) 43 (pH 7) 125 (pH 7)§ 35 (pH 7)
140 (pH 7)   120      
    181      
K m (S0.5) (mM) 0.67 ± 0.05 (pH 6.5) 2.8 ± 0.2 (pH 6.5) 1.3 (pH 6.5) 0.06 (pH 5) 0.12 (pH 5) 13
2.5 ± 0.2 (pH 6.5) 0.39 (pH 5) 0.43 (pH 6) 0.6 (pH 6) 1.2 (pH 6) 5.7 (pH 6.5)
0.24 (pH 6) 5.1 (pH 7) 0.94 (pH 7) 1.2 (pH 7) 2.8 (pH 7)§ 4.0 (pH 7)
0.71 (pH 7)   0.31 (pH 6)      
    1.1      
    0.4 (pH 6)      
PDB entry 5euj 2vbi 1zpd 4cok NA NA
GenBank gene AF474145 AF368435.1 M15393.2 KJ746104.1 KF650839.1 AAL18557.1
GenBank protein AAM49566.1 AAM21208.1 AAA27696.2 AIG13066.1 AHB37781.1 AF354297.1
R.m.s.d. Reference 0.70 0.70 0.62 NA NA
Q scores Reference 0.94 0.90 0.94 NA NA

Gocke et al. (2009).

van Zyl, Schubert et al. (2014).

§

van Zyl, Taylor et al. (2014).

Raj et al. (2002).

††

Lowe & Zeikus (1992).

‡‡

Siegert et al. (2005).

§§

Bringer-Meyer et al. (1986).

¶¶

Meyer et al. (2010).