Table 5. Properties of known bacterial PDCs in order of decreasing thermostability.
| ZpPDC | ApPDC | ZmPDC | GdPDC | GoPDC | SvPDC | |
|---|---|---|---|---|---|---|
| Gram status | Negative | Negative | Negative | Negative | Negative | Positive |
| Amino-acid identity (%) | Reference | 73 | 63 | 71 | 67 | 31 |
| Temperature optimum (°C) | 65 | 65† | 60† | 45–50‡ | 53§ | NA |
| Temperature dependence of activity retention | 60°C, 100% | 50°C, 100% | 45°C, 85% | NA (half-life at 60°C, 0.3 h‡) | 55°C, 98% | 45°C, 95% |
| 65°C, 80%† | 60°C, 65% | 60°C, 65% | 60°C, 70% | 50°C, 0%¶ | ||
| 70°C, 0% | 65°C, 45% | 65°C, 45% | 65°C, 40%§ | |||
| 70°C, 5%¶ | 70°C, 0%¶ | |||||
| Kinetics | Michaelis–Menten | Michaelis–Menten | Michaelis–Menten | Michaelis–Menten | Michaelis–Menten | Sigmoidal |
| V max (U mg−1) | 165 ± 3 (pH 6.5) | 110 ± 2 (pH 6.5)† | 121 (pH 6.5)† | 20 (pH 5) | 57 (pH 5) | 103 |
| 116 ± 2 (pH 6.5)† | 97 (pH 5)¶ | 100 (pH 6)¶ | 39 (pH 6) | 47 (pH 6) | 45 (pH 6.5)¶ | |
| 130 (pH 6)¶ | 79 (pH 7)¶ | 78 (pH 7)¶ | 43 (pH 7)‡ | 125 (pH 7)§ | 35 (pH 7)¶ | |
| 140 (pH 7)¶ | 120 | |||||
| 181† | ||||||
| K m (S0.5) (mM) | 0.67 ± 0.05 (pH 6.5) | 2.8 ± 0.2 (pH 6.5)† | 1.3 (pH 6.5)† | 0.06 (pH 5) | 0.12 (pH 5) | 13 |
| 2.5 ± 0.2 (pH 6.5)† | 0.39 (pH 5)¶ | 0.43 (pH 6)¶ | 0.6 (pH 6) | 1.2 (pH 6) | 5.7 (pH 6.5) | |
| 0.24 (pH 6)¶ | 5.1 (pH 7)¶ | 0.94 (pH 7)¶ | 1.2 (pH 7) ‡ | 2.8 (pH 7)§ | 4.0 (pH 7)¶ | |
| 0.71 (pH 7)¶ | 0.31 (pH 6)‡ | |||||
| 1.1 | ||||||
| 0.4 (pH 6)† | ||||||
| PDB entry | 5euj | 2vbi | 1zpd | 4cok | NA | NA |
| GenBank gene | AF474145 | AF368435.1 | M15393.2 | KJ746104.1 | KF650839.1 | AAL18557.1 |
| GenBank protein | AAM49566.1 | AAM21208.1 | AAA27696.2 | AIG13066.1 | AHB37781.1 | AF354297.1 |
| R.m.s.d. | Reference | 0.70 | 0.70 | 0.62 | NA | NA |
| Q scores | Reference | 0.94 | 0.90 | 0.94 | NA | NA |