Skip to main content
. 2016 Aug 26;72(Pt 9):700–706. doi: 10.1107/S2053230X16012012

Table 7. Comparison of interactions within interfaces of bacterial PDC structures in order of decreasing thermostability.

Interactions were determined using PISA. Neighbour, interactions between neighbouring monomers; diagonal, interactions between monomers diagonally across tetrameric centre.

  ZpPDC (PDB entry 5euj) ApPDC (PDB entry 2vbi) ZmPDC (PDB entry 1zpd) GdPDC (PDB entry 4cok)
  Hydrogen bonds Salt bridges Hydrogen bonds Salt bridges Hydrogen bonds Salt bridges Hydrogen bonds Salt bridges
Dimer interface 73 12 61 16 76 (66) 14 (7) 63 13
Major tetramer interface (neighbour) 31 24 34 14 29 (64) 8 (25) 17 9
Minor tetramer interface (diagonal) 2 0 4 0 6 2 4 3
TPP pyrimidine ring 11 0 10 0 12 0 10 0

Dobritzsch et al. (1998).