Table 7. Comparison of interactions within interfaces of bacterial PDC structures in order of decreasing thermostability.
Interactions were determined using PISA. Neighbour, interactions between neighbouring monomers; diagonal, interactions between monomers diagonally across tetrameric centre.
| ZpPDC (PDB entry 5euj) | ApPDC (PDB entry 2vbi) | ZmPDC (PDB entry 1zpd) | GdPDC (PDB entry 4cok) | |||||
|---|---|---|---|---|---|---|---|---|
| Hydrogen bonds | Salt bridges | Hydrogen bonds | Salt bridges | Hydrogen bonds | Salt bridges | Hydrogen bonds | Salt bridges | |
| Dimer interface | 73 | 12 | 61 | 16 | 76 (66†) | 14 (7†) | 63 | 13 |
| Major tetramer interface (neighbour) | 31 | 24 | 34 | 14 | 29 (64†) | 8 (25†) | 17 | 9 |
| Minor tetramer interface (diagonal) | 2 | 0 | 4 | 0 | 6 | 2 | 4 | 3 |
| TPP pyrimidine ring | 11 | 0 | 10 | 0 | 12 | 0 | 10 | 0 |
Dobritzsch et al. (1998 ▸).