Table 3. Summary of EST-SSRs identified from the unigenes of colored calla lily ‘Rehmannii’.
Repeat motif | Number of repeats | |||||||
---|---|---|---|---|---|---|---|---|
5 | 6 | 7 | 8 | 9 | 10 | >10 | Total | |
Di- (3,482, 59.78%) | ||||||||
AG/CT | 0 | 652 | 568 | 525 | 536 | 381 | 106 | 2,768 |
AT/AT | 0 | 108 | 68 | 61 | 46 | 49 | 28 | 360 |
AC/GT | 0 | 132 | 70 | 54 | 25 | 32 | 15 | 328 |
CG/CG | 0 | 14 | 7 | 0 | 3 | 2 | 0 | 26 |
Tri- (2,261, 38.82%) | ||||||||
AGG/CCT | 316 | 116 | 43 | 4 | 1 | 0 | 0 | 480 |
AAG/CTT | 258 | 136 | 67 | 6 | 0 | 0 | 1 | 468 |
AGC/CTG | 252 | 99 | 39 | 2 | 0 | 0 | 0 | 392 |
CCG/CGG | 245 | 85 | 39 | 3 | 0 | 0 | 0 | 372 |
ATC/ATG | 96 | 37 | 21 | 3 | 0 | 0 | 0 | 157 |
ACC/GGT | 84 | 42 | 20 | 3 | 1 | 0 | 0 | 150 |
Other | 146 | 49 | 35 | 11 | 1 | 0 | 0 | 242 |
Tetra- (62, 1.06%) | ||||||||
AAAG/CTTT | 14 | 2 | 0 | 0 | 0 | 0 | 0 | 16 |
AGAT/ATCT | 12 | 1 | 0 | 0 | 0 | 0 | 0 | 13 |
ACAT/ATGT | 4 | 1 | 1 | 0 | 0 | 0 | 0 | 6 |
AAAT/ATTT | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 5 |
Others | 17 | 3 | 1 | 1 | 0 | 0 | 0 | 22 |
Penta- (13,0.22%) | 13 | 0 | 0 | 0 | 0 | 0 | 0 | 13 |
Hexa- (7, 0.12%) | 3 | 0 | 2 | 1 | 0 | 0 | 1 | 7 |
Total | 1,465 | 1,477 | 981 | 674 | 613 | 464 | 151 | 5,825 |
Percentage | 25.15% | 25.36% | 16.84% | 11.57% | 10.52% | 7.97% | 2.59% | 100% |