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. 2016 Aug 31;4:e2388. doi: 10.7717/peerj.2388

Table 1. Classification and characterization of the sacred lotus GRAS genes.

ID Name Branch HMM E-value No. of nucleotides No. of aa Molecular weight pI Formula Instability index Aliphatic GRAVY
NnuGRAS-01 NNU_15494-RA SCL3/28 3.70E–140 1,434 477 53252.1 5.76 C2366H3773N647O706S21 54.51 Unstable 99.01 −0.132
NnuGRAS-02 NNU_17397-RA DELLA 7.30E–139 1,833 610 66855.9 5.4 C2939H4636N818O902S31 53.52 Unstable 83.38 −0.222
NnuGRAS-03 NNU_14168-RA SCL3/28 1.30E–137 1,788 488 54286.4 6.04 C2414H3856N660O716S22 54.16 Unstable 99.98 −0.097
NnuGRAS-04 NNU_20476-RA PAT1 1.20E–136 6,387 586 64,924 5.59 C2842H4425N791O891S31 53.55 Unstable 78.94 −0.322
NnuGRAS-05 NNU_16008-RA PAT1 2.10E–136 4,156 583 64651.4 5.27 C2836H4393N779O897S28 52.78 Unstable 78.66 −0.318
NnuGRAS-06 NNU_07942-RA PAT1 6.30E–135 1,611 536 59725.6 4.92 C2608H4118N710O828S33 43.73 Unstable 78.26 −0.327
NnuGRAS-07 NNU_11308-RA PAT1 1.00E–131 4,409 548 61113.5 4.95 C2684H4244N728O834S33 37.54 Stable 83.49 −0.272
NnuGRAS-08 NNU_03991-RA DELLA 2.60E–129 4,329 593 64180.3 5.1 C2815H4428N778O886S26 53.2 Unstable 81.32 −0.235
NnuGRAS-09 NNU_26305-RA DELLA 3.60E–128 1,626 541 59193.2 5.22 C2630H4110N720O790S23 51.23 Unstable 92.53 −0.084
NnuGRAS-10 NNU_16483-RA PAT1 4.70E–128 7,898 662 74350.6 5.66 C3250H5105N927O1014S30 44.32 Unstable 77.95 −0.412
NnuGRAS-11 NNU_21567-RA DELLA 7.50E–127 1,608 535 58522.3 5.32 C2585H4044N720O784S24 49.26 Unstable 90.13 −0.096
NnuGRAS-12 NNU_08209-RA SCL3/28 2.30E–126 2,185 683 75837.6 5.63 C3330H5272N948O1030S24 61.82 Unstable 83.66 −0.352
NnuGRAS-13 NNU_20591-RA LS 7.30E–126 1,245 414 45,901 6.3 C2041H3207N581O606S10 47.77 Unstable 94.78 −0.117
NnuGRAS-14 NNU_16619-RA SCR 1.60E–124 4,303 784 85555.9 6.06 C3759H5920N1072O1176S19 57.82 Unstable 82.9 −0.338
NnuGRAS-15 NNU_08928-RA PAT1 2.60E–123 2,720 550 61,805 6.61 C2723H4317N773O832S19 44.49 Unstable 87.24 −0.345
NnuGRAS-16 NNU_03584-RA SCL9 7.00E–119 2,835 746 84235.5 5.29 C3705H5803N1037O1160S25 53.45 Unstable 77.53 −0.537
NnuGRAS-17 NNU_18761-RA SCL9 2.70E–118 2,223 627 70849.7 6.01 C3138H4930N892O959S11 82.07 Unstable 82.07 −0.537
NnuGRAS-18 NNU_08634-RA PAT1 8.00E–118 5,833 532 58264.3 5.54 C2495H3985N743O809S29 49.85 Unstable 70.6 −0.462
NnuGRAS-19 NNU_01236-RA SCR 1.90E–113 1,365 454 49903.5 5.85 C2197H3497N631O671S13 56.62 Unstable 94.36 −0.211
NnuGRAS-20 NNU_05389-RA SCL4/7 1.40E–108 3,329 611 67346.8 5.23 C3000H4645N815O915S18 53.84 Unstable 78.27 −0.325
NnuGRAS-21 NNU_19189-RA SHR 7.80E–106 1,500 499 56052.4 5.28 C2461H3782N686O777S20 49.41 Unstable 67.68 −0.411
NnuGRAS-22 NNU_14510-RA HAM 2.10E–105 2,424 807 87078.9 5.75 C3863H6027N1077O1182S19 56.65 Unstable 80.62 −0.299
NnuGRAS-23 NNU_17205-RA SCL4/7 2.10E–104 1,821 606 66470.6 4.85 C2951H4568N792O918S20 49.03 Unstable 79.72 −0.285
NnuGRAS-24 NNU_18273-RA HAM 5.30E–102 2,352 783 84714.6 5.85 C3765H5869N1047O1138S22 57.71 Unstable 81.61 −0.265
NnuGRAS-25 NNU_04162-RA PAT1 7.80E–100 993 330 36,648 6.4 C1588H2554N462O483S25 39.75 Stable 78.58 −0.269
NnuGRAS-26 NNU_22900-RA SHR 1.10E–93 1,326 441 49603.4 5.06 C2179H3457N589O681S25 43.42 Unstable 84.42 −0.223
NnuGRAS-27 NNU_02726-RA SHR 4.60E–92 1,314 437 49356.8 5.03 C2160H3379N599O672S27 46.58 Unstable 77.21 −0.343
NnuGRAS-28 NNU_13719-RA SHR 2.70E–91 1,374 457 50,818 5.58 C2274H3536N616O665S21 46.46 Unstable 89.65 −0.048
NnuGRAS-29 NNU_16238-RA SHR 4.90E–89 1,305 434 48077.9 5.21 C2145H3353N575O638S21 48.31 Unstable 92.37 0.005
NnuGRAS-30 NNU_05428-RA HAM 2.90E–88 1,650 549 61261.3 5.84 C2735H4208N750O810S22 57.5 Unstable 80.35 −0.165
NnuGRAS-31 NNU_08924-RA SHR 6.40E–86 1,347 448 50029.1 6.23 C2226H3468N616O652S23 43.81 Unstable 86.88 −0.129
NnuGRAS-32 NNU_04825-RA SCR 4.00E–85 1,518 442 50581.1 6.05 C2225H3520N640O681S14 40.46 Unstable 86.06 −0.524
NnuGRAS-33 NNU_16490-RA SHR 1.20E–84 1,362 453 50501.8 5.92 C2240H3512N622O657S26 43.89 Unstable 91.04 −0.094
NnuGRAS-34 NNU_26501-RA SCL4/7 2.30E–41 507 168 19260.9 5.49 C867H1357N229O257S5 48.5 Unstable 97.44 −0.175
NnuGRAS-35 NNU_03990-RA PAT1 1.50E–30 6,791 338 38985.3 9.03 C1732H2723N483O518S12 60.74 Unstable 74.47 −0.695
NnuGRAS-36 NNU_15540-RA SCL4/7 5.70E–22 294 97 10979.6 4.95 C488H793N129O151S3 34.28 stable 103.51 −0.167
NnuGRAS-37 NNU_11453-RA HAM 4.00E–13 225 74 8400.7 5.16 C384H601N97O108S3 64.4 Unstable 108.11 0.264
NnuGRAS-38 NNU_24984-RA PAT1 7.10E–06 4,774 441 48806.2 9.12 C2245H3507N561O609S22 42.85 Unstable 105.01 0.482