Skip to main content
. 2016 Jul 11;204(1):77–87. doi: 10.1534/genetics.116.190462

Table 1. List of published DMS studies assessing mutant growth rates in accordance with our statistical model, arranged by number of time points sampled.

Reference No. of time points No. of mutants Total no. of sequence reads (millions) Reproducibility (if reported) Summary of reference
Hietpas et al. (2013) 6 or 7 568 30 R2=0.95 for full replicates Beneficial single substitutions in Hsp90 of yeast under altered environments
Jiang et al. (2013) 6 or 7 568 34 R2=0.96 for full replicates Interaction of expression and single substitutions on DFE of yeast Hsp90
Puchta et al. (2016) 5–7 ≈60,000 545.7 R2=0.85 Network of epistatic interactions in yeast small nucleolar RNA
Roscoe et al. (2013) 6 1,530 21 R2=0.93 for full replicates Functional biophysics of single substitutions in ubiquitin of yeast
Hietpas et al. (2011) 3 or 7 568 26 R2=0.82 for full replicates DFE of single substitutions for a short region of Hsp90 in yeast
Bank et al. (2015) 5 1,015 21.6 Credibility intervals (figure 6B) DFE of epistatic substitutions in Hsp90 of yeast
Wu et al. (2013) 3 >400 >0.002 NA Compensatory single substitutions for neuraminidase mutant of influenza
Li et al. (2016) 2 65,537 685.5 R2=0.997 mean across 15 pairs of biological replicates Fitness landscape of a transfer RNA gene in yeast
Jiang et al. (2015) 2 475 20.5 R2=0.92 for full replicates Biophysics of single substitutions in influenza neuraminidase with antiviral
Roscoe and Bolon (2014) 2 1,617 30 R2=0.96 for full replicates Biophysics of single ubiquitin substitutions on E1 activity and yeast fitness
Melnikov et al. (2014) 2 4,993 33.2 R2=0.90 for full replicates Biophysics of single substitutions in APH(3′)II in Escherichia coli with antibiotics
Kim et al. (2013) 2 29,708 90.2 NA Biophysics of single substitutions in yeast Deg1 protein degradation signal
Melamed et al. (2013) 2 110,745 186.5 NA Biophysics of single and multiple substitutions in Pab1 RRM of yeast
Klesmith et al. (2015) 2 9,219 5.8 Reproducibility plot Biophysics of levoglucosan consumption rate in E. coli