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. 2016 Sep 6;11(9):e0160929. doi: 10.1371/journal.pone.0160929

Table 2. Sample size-normalized gene counts for the 31 biogeochemically-relevant genes.

Values are the average of the duplicate samples, per 10 million sequences. Bolded/underlined numbers highlight the highest expression for that gene.

Gene Abbreviation Gene Name Station 2 Station 3 Station 10 Station 23 Station 25 Station 27
rbcL_IB RuBisCO form IB 7 46 24 16 8 1
rbcL_ID RuBisCO form ID 24 15 75 2 27 1
psbA Photosystem II protein D1 9005 350 1487 106 8493 78
a-CA Carbonic anhydrase (alpha) 216 367 332 266 179 161
d-CA Carbonic anhydrase (delta) 740 484 2388 498 461 466
tkt Transketolase 1117 697 2082 269 620 180
casE Chitinase 277 565 110 182 385 171
Chs3p Chitin synthase III 2 17 552 1 2 0
bglA Beta-glucosidase 516 413 313 491 386 345
GADPH Glyceraldehyde-3-phosphate dehydrogenase 12782 6869 16908 6043 12237 6931
GPI Glucose-6-phosphate isomerase 229 339 584 192 249 231
metF Methylene tetrahydrofolate reductase 379 148 175 106 287 130
phaB Acetoacetyl-CoA reductase 1676 1734 1883 1258 1478 1141
phaA Beta-ketothiolase 1125 1294 898 1079 876 1063
AA_Permease Amino acid permeases 236 188 536 100 287 64
AAP Alanine aminopeptidase 106 116 236 62 70 54
LAP Leucine aminopeptidase 370 684 557 442 282 251
amtB Ammonium transporter 340 170 217 211 263 144
ProAP Proline aminopeptidase 213 294 297 246 169 144
UT Eukaryotic urea transporter 128 204 661 171 96 51
MetAP Methionine aminopeptidase 417 503 613 456 363 355
NAT Eukaryotic nitrate transporter 563 212 7960 175 325 27
pitA Low affinity phosphate transporter 484 72 216 153 182 80
ppk2 Polyphosphate kinase 2 82 112 66 73 54 102
cysK Cysteine synthetase A 294 353 447 278 246 217
Xsc Sulfoacetaldehyde acetyltransferase 63 62 48 85 53 42
SiR-beta Sulfite reductase (beta subunit) 118 104 370 68 137 37
SIT Silicon transporter family 2046 400 1053 280 1666 215
pdxH Pyridoxamine 5'-phosphate oxidase 89 74 29 45 109 199
pdxK Pyridoxinal (pyridoxine, vitamin B6) kinase 30 10 19 9 10 22
thiC Phosphomethylpyrimidine synthase 1 2 61 0 0 0