Table 2. Sample size-normalized gene counts for the 31 biogeochemically-relevant genes.
Values are the average of the duplicate samples, per 10 million sequences. Bolded/underlined numbers highlight the highest expression for that gene.
Gene Abbreviation | Gene Name | Station 2 | Station 3 | Station 10 | Station 23 | Station 25 | Station 27 |
---|---|---|---|---|---|---|---|
rbcL_IB | RuBisCO form IB | 7 | 46 | 24 | 16 | 8 | 1 |
rbcL_ID | RuBisCO form ID | 24 | 15 | 75 | 2 | 27 | 1 |
psbA | Photosystem II protein D1 | 9005 | 350 | 1487 | 106 | 8493 | 78 |
a-CA | Carbonic anhydrase (alpha) | 216 | 367 | 332 | 266 | 179 | 161 |
d-CA | Carbonic anhydrase (delta) | 740 | 484 | 2388 | 498 | 461 | 466 |
tkt | Transketolase | 1117 | 697 | 2082 | 269 | 620 | 180 |
casE | Chitinase | 277 | 565 | 110 | 182 | 385 | 171 |
Chs3p | Chitin synthase III | 2 | 17 | 552 | 1 | 2 | 0 |
bglA | Beta-glucosidase | 516 | 413 | 313 | 491 | 386 | 345 |
GADPH | Glyceraldehyde-3-phosphate dehydrogenase | 12782 | 6869 | 16908 | 6043 | 12237 | 6931 |
GPI | Glucose-6-phosphate isomerase | 229 | 339 | 584 | 192 | 249 | 231 |
metF | Methylene tetrahydrofolate reductase | 379 | 148 | 175 | 106 | 287 | 130 |
phaB | Acetoacetyl-CoA reductase | 1676 | 1734 | 1883 | 1258 | 1478 | 1141 |
phaA | Beta-ketothiolase | 1125 | 1294 | 898 | 1079 | 876 | 1063 |
AA_Permease | Amino acid permeases | 236 | 188 | 536 | 100 | 287 | 64 |
AAP | Alanine aminopeptidase | 106 | 116 | 236 | 62 | 70 | 54 |
LAP | Leucine aminopeptidase | 370 | 684 | 557 | 442 | 282 | 251 |
amtB | Ammonium transporter | 340 | 170 | 217 | 211 | 263 | 144 |
ProAP | Proline aminopeptidase | 213 | 294 | 297 | 246 | 169 | 144 |
UT | Eukaryotic urea transporter | 128 | 204 | 661 | 171 | 96 | 51 |
MetAP | Methionine aminopeptidase | 417 | 503 | 613 | 456 | 363 | 355 |
NAT | Eukaryotic nitrate transporter | 563 | 212 | 7960 | 175 | 325 | 27 |
pitA | Low affinity phosphate transporter | 484 | 72 | 216 | 153 | 182 | 80 |
ppk2 | Polyphosphate kinase 2 | 82 | 112 | 66 | 73 | 54 | 102 |
cysK | Cysteine synthetase A | 294 | 353 | 447 | 278 | 246 | 217 |
Xsc | Sulfoacetaldehyde acetyltransferase | 63 | 62 | 48 | 85 | 53 | 42 |
SiR-beta | Sulfite reductase (beta subunit) | 118 | 104 | 370 | 68 | 137 | 37 |
SIT | Silicon transporter family | 2046 | 400 | 1053 | 280 | 1666 | 215 |
pdxH | Pyridoxamine 5'-phosphate oxidase | 89 | 74 | 29 | 45 | 109 | 199 |
pdxK | Pyridoxinal (pyridoxine, vitamin B6) kinase | 30 | 10 | 19 | 9 | 10 | 22 |
thiC | Phosphomethylpyrimidine synthase | 1 | 2 | 61 | 0 | 0 | 0 |