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. 2016 Jun 21;15(9):2908–2923. doi: 10.1074/mcp.M115.057778

Table II. Genes differentially expressed in the parental strain and ΔaKMT.

ORF Description log2(Fold_change) normalized q-value
SiRe_0121 flagellar protein F 1.123885005 2.63E-20
SiRe_0123 hypothetical protein 1.190823554 1.23E-80
SiRe_0124 flagellin 1.167864412 0
SiRe_0125 hypothetical protein 1.019799216 0.0001001
SiRe_0128 hypothetical protein 1.041792647 4.57E-22
SiRe_0130 hypothetical protein 2.535720072 0.0005146
SiRe_0131 CopG family transcriptional regulator 1.331361573 1.43E-08
SiRe_0159 von Willebrand factor type A domain-containing protein 1.0700565 4.68E-133
SiRe_0227 hypothetical protein 1.151290559 1.16E-06
SiRe_0301 TetR family transcriptional regulator 1.279706094 3.04E-06
SiRe_0318 carbon monoxide dehydrogenase subunit G 1.079081668 0.0001399
SiRe_0374 VapB-type antitoxin 1.353881749 1.98E-12
SiRe_0379 acetoacetate decarboxylase 1.580807961 2.84E-10
SiRe_0453 ferritin Dps family protein 1.229184027 5.32E-13
SiRe_0552 5-oxoprolinase 1.060539745 6.41E-135
SiRe_0706 4-hydroxyphenylacetate 3-hydroxylase 2.362183817 1.77E-67
SiRe_0707 3,4-dihydroxyphenylacetate 2,3-dioxygenase 2.960472726 2.21E-48
SiRe_0975 heterodisulfide reductase, subunit C (HdrC-1) 1.363197959 3.93E-88
SiRe_0978 DsrE family protein 1.274522325 1.73E-42
SiRe_0981 glutaredoxin-like protein 1.254307137 8.16E-11
SiRe_1012 tRNA (guanine-N1-)-methyltransferase 1.16400161 9.05E-13
SiRe_1034 hypothetical protein 1.850761781 4.42E-39
SiRe_1360 radical SAM protein 1.095492664 4.58E-19
SiRe_1498 hypothetical protein 1.237638719 0.0007216
SiRe_1528 hypothetical protein 1.098511192 1.75E-05
SiRe_1536 hypothetical protein 1.046759391 9.19E-10
SiRe_1549 hypothetical protein 1.193871283 1.28E-18
SiRe_1752 FAD dependent oxidoreductase 1.487545478 6.03E-120
SiRe_1753 Adenylosuccinate synthase 1.23141556 2.38E-76
SiRe_2008 peptidase M48 Ste24p 1.021146899 0.00068
SiRe_2014 putative signal-transduction protein with CBS domains 1.056110571 2.53E-06
SiRe_2050 Helix-turn-helix type 11 domain-containing protein 1.045084954 0.000787
SiRe_2095 hypothetical protein 1.618775812 1.39E-11
SiRe_2149 hypothetical protein 1.071051805 8.91E-05
SiRe_2250 hypothetical protein 1.332628207 1.66E-10
SiRe_2380 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 1.135873742 4.27E-161
SiRe_2381 pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta 1.018450272 2.31E-40
SiRe_2444 hypothetical protein 1.304394526 2.50E-08
SiRe_2462 formate dehydrogenase family accessory protein FdhD 1.313327651 1.04E-13
SiRe_2463 hypothetical protein 1.542033846 6.32E-17
SiRe_2464 formate dehydrogenase subunit alpha 1.170590661 3.55E-132
SiRe_2603 hypothetical protein 3.013767369 1.06E-19
SiRe_2663 hypothetical protein 1.78083257 2.62E-06
SiRe_0072 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase -1.193632338 5.58E-07
SiRe_0427 Rossmann fold nucleotide-binding protein -1.132658437 8.34E-05
SiRe_0429 SAF domain-containing protein -2.486647741 1.16E-09
SiRe_0430 d-galactarate dehydratase/altronate hydrolase domain-containing protein -1.758463032 6.46E-19
SiRe_0431 mandelate racemase/muconate lactonizing family protein -2.119631757 3.00E-10
SiRe_0435 citryl-CoA lyase -1.17342184 4.37E-10
SiRe_0471 6-phosphogluconate dehydrogenase -1.006681967 5.17E-07
SiRe_0546 hypothetical protein -1.021008748 1.83E-10
SiRe_0587 hypothetical protein -2.703246574 6.28E-33
SiRe_0588 ABC transporter ATP-binding protein -2.309478201 1.20E-26
SiRe_0590 beta-lactamase domain-containing protein -1.089506299 2.04E-05
SiRe_0591 helicase domain-containing protein -1.212281045 1.52E-32
SiRe_0592 hypothetical protein -1.224684435 1.74E-07
SiRe_0593 ATPase (AAA+ superfamily)-like protein -1.288354047 1.91E-70
SiRe_0594 hypothetical protein -1.333846917 1.46E-87
SiRe_0621 cupin -1.607237882 7.15E-05
SiRe_0696 hypothetical protein -3.868002114 7.63E-27
SiRe_0788 hypothetical protein -1.037169596 1.90E-05
SiRe_0789 amidohydrolase -1.069394687 1.25E-33
SiRe_0920 hypothetical protein -1.224949783 4.71E-20
SiRe_0965 Peptidase S53 propeptide -1.360928471 0
SiRe_1415 histidinol-phosphate aminotransferase -1.111683004 1.04E-24
SiRe_1427 magnesium-dependent phosphatase-1 -1.408323522 0.0001571
SiRe_1449 methyltransferase -7.879599176 3.86E-244
SiRe_1450 hypothetical protein -2.200081589 3.77E-99
SiRe_1598 riboflavin synthase -1.036303373 3.97E-05
SiRe_1601 amidohydrolase -1.161717158 0.0001507
SiRe_1708 general substrate transporter -1.110642973 5.20E-24
SiRe_1905 ribosomal protein L7Ae -1.187504966 1.05E-75
SiRe_1986 hypothetical protein -1.351565966 7.17E-25
SiRe_2123 raffinose synthase -1.145744597 2.03E-73
SiRe_2283 ABC-type dipeptide/oligopeptide/nickel transport system, permease, DppC -1.102353765 1.41E-11
SiRe_2290 hypothetical protein -3.049242429 3.52E-06
SiRe_2291 radical SAM domain-containing protein -1.712207442 0.0005369
SiRe_2422 4Fe-4S ferredoxin -1.617526188 3.26E-14
SiRe_2423 hypothetical protein -1.488664087 3.70E-13
SiRe_2424 4Fe-4S ferredoxin -1.561354364 3.15E-38
SiRe_2425 molybdopterin oxidoreductase -1.292619875 1.15E-172
SiRe_2427 polysulfide reductase NrfD -1.053043999 1.75E-31
SiRe_2482 major facilitator superfamily protein -1.339227631 1.52E-20
SiRe_2537 cellobiose binding protein -1.713714636 0
SiRe_2586 family 5 extracellular solute-binding protein -1.009435478 0